View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_29 (Length: 365)
Name: NF13314_low_29
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 39680435 - 39680086
Alignment:
| Q |
1 |
cgagtgccgcttcgaattcatgatcatccacatcgttcagccaatgttcaacatcccatccaaatttcccaccttcaatctctcccattttcaaccaatc |
100 |
Q |
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| T |
39680435 |
cgagtgccgcttcgaattcatgatcatccacatcattcagccaatgttcaacatcccatccaaatttcccaccttcaatctctcccattttcaaccaatc |
39680336 |
T |
|
| Q |
101 |
atcaacattttcaattcttgcatcacaatcaagcaacttaggaacacggtgtgttaaactcatagccataggtaacttactttgtggaccctctacatca |
200 |
Q |
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| T |
39680335 |
atcaacattttcaattcttgcatcacaatcaagcaacttaggaacacggtgtgttaaactcatagccataggtaacttactctgtggaccctctacatca |
39680236 |
T |
|
| Q |
201 |
tcaccaccaacatcaaaaacaaacttccttttctcgcttctgttattactactactgctactactaccgccagagctttcaccttcctctgaaatagtca |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680235 |
tcaccaccaacatcaaaaacaaactttcttttctcgcttctgttattactactactgctactactaccgccagagctttcaccttcctctgaaatagtca |
39680136 |
T |
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| Q |
301 |
atttatggcatttatcagtaactccaagcaaagcttcttcttgattcata |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680135 |
atttatggcatttatcagtaactccaagcaaagcttcttcttgattcata |
39680086 |
T |
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