View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_31 (Length: 345)
Name: NF13314_low_31
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_31 |
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| [»] scaffold0059 (2 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: scaffold0059 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 3413 - 3687
Alignment:
| Q |
30 |
atccatatctttccttcttccccttcttgttccagcttcttcaggttcagaatttggatccacctgagaagacacctttgatatttagttcacctattag |
129 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3413 |
atccatatctttccttcttccccttcttgtttcagcttcttcaggttcagaatttggatccacctgagaagacacctttgatatttagttcacctattag |
3512 |
T |
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| Q |
130 |
cactctttgtaatagattacgacccttagtcaaagccacaccaaagtatcagacataggtgaaagatataagcttaacatggggttcctctttcataaat |
229 |
Q |
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||||||| |||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
3513 |
cactcttggtaataaattacgacccttggtcaaagccacaccaaagcatctgacataggtgaaagatataagcataacatggggttcctctttcataact |
3612 |
T |
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| Q |
230 |
tttatatgcccttgaataaaataactttataccgaacctgatagcttaacttgggcttccattgtaatggttgat |
304 |
Q |
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| T |
3613 |
tatatatgcacttgaataaaacaactttatacggaacctgataggttaacttgggcttccatcgtaattgttgat |
3687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 9560 - 9847
Alignment:
| Q |
18 |
aagaactgcataatccatatctttccttcttccccttcttgttccagcttcttcaggttcagaatttggatccacctgagaagacacctttgatatttag |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
9560 |
aagaactgcattatccatatctttccttcttccccttcttgttccagcttcttcaggttcagaatttggatccacctgagaatacaccttagatttttag |
9659 |
T |
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| Q |
118 |
ttcacctattagcactctttgtaatagattacgacccttagtcaaagccacaccaaagtatcagacataggtgaaagatataagcttaacatggggttcc |
217 |
Q |
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| T |
9660 |
ttcacctattagcactcttattaataaattacgacccttggtcaaagccacaccaaagcttctgacatagatgaaagatataagcttaacatggggttcc |
9759 |
T |
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| Q |
218 |
tctttcataaattttatatgcccttgaataaaataac-tttataccgaacctgatagcttaacttgggcttccattgtaatggttgat |
304 |
Q |
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| T |
9760 |
tctttcataacttatatatgcacttgaataaaataacttttatacggaatctgatagcttaacttgggcttccattgtaattgttgat |
9847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 235838 - 235551
Alignment:
| Q |
18 |
aagaactgcataatccatatctttccttcttccccttcttgttccagcttcttcaggttcagaatttggatccacctgagaagacacctttgatatttag |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
235838 |
aagaactgcattatccatatctttccttcttccccttcatgttccagcttcttcaggttcagaatttggatccacctgagaatacaccttagatttttag |
235739 |
T |
|
| Q |
118 |
ttcacctattagcactctttgtaatagattacgacccttagtcaaagccacaccaaagtatcagacataggtgaaagatataagcttaacatggggttcc |
217 |
Q |
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||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
235738 |
ttcacctattagcactcttattaataaattacgacccttggtcaaagccacaccaaagcttctgacatagatgaaagatataagcttaacatggggttcc |
235639 |
T |
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| Q |
218 |
tctttcataaattttatatgcccttgaataaaataac-tttataccgaacctgatagcttaacttgggcttccattgtaatggttgat |
304 |
Q |
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| T |
235638 |
tctttcataacttatatatgcacttgaataaaataacttttatacggaatctgatagcttaacttgggcttccattgtaattgttgat |
235551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 244511 - 244384
Alignment:
| Q |
95 |
gagaagacacctttgatatttagttcacctattagcactctttgtaatagattacgacccttagtcaaagccaca-ccaaagtatcagacataggtgaaa |
193 |
Q |
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||||| ||||||||||| | |||||| |||||||||||||| |||||| |||| | | ||| |||||||||||| |||||| ||| ||||||| | ||| |
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| T |
244511 |
gagaaaacacctttgat-tgcagttcatctattagcactcttagtaataaattatggcacttggtcaaagccacacccaaagcatctgacatagataaaa |
244413 |
T |
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| Q |
194 |
gatataagcttaacatggggttcctcttt |
222 |
Q |
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| T |
244412 |
ggtgcaagtttaacatgggcttcctcttt |
244384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 22601186 - 22601395
Alignment:
| Q |
17 |
caagaactgcataatccatatctttccttcttccccttcttgttccagcttcttcaggttcagaatttggatccacctgagaagacacctttgatattta |
116 |
Q |
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||||||||||| |||||||||||||||| ||||||||| ||||||||| | ||||||||||||||| ||||||||| || ||| |||||||||| |||| |
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| T |
22601186 |
caagaactgcactatccatatctttcctttttccccttcctgttccagcctattcaggttcagaattcggatccaccagaaaagtcacctttgattttta |
22601285 |
T |
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| Q |
117 |
gttcacctattagcactctttgtaatagattacgacccttagtcaaagccacaccaaagtatcagacataggtgaaagatataagcttaacatggggttc |
216 |
Q |
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||||||||||||| |||| | |||||| |||||||| ||| ||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||| |
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| T |
22601286 |
gttcacctattagtactcatagtaataaattacgacgcttggtcaaagccacacgaaagcatctgacataggtgaaagatgcaagcttaacttgggcttc |
22601385 |
T |
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| Q |
217 |
ctctttcata |
226 |
Q |
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||| |||||| |
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| T |
22601386 |
ctcattcata |
22601395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 22604669 - 22604769
Alignment:
| Q |
233 |
atatgcccttgaataaaataactttataccgaacctgatagcttaacttgggcttccattgtaatggttgataannnnnnnccatattgtggggaaatat |
332 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22604669 |
atatgcacttgaataaaataactttatatggaacctgatagcttaacttgggcttccattgtaatggttgataatttttttccatattgtggggaaatat |
22604768 |
T |
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| Q |
333 |
t |
333 |
Q |
| |
|
| |
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| T |
22604769 |
t |
22604769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 1742289 - 1742404
Alignment:
| Q |
20 |
gaactgcataatccatatctttccttcttccccttcttgttccagcttcttcaggttcagaatttggatccacctgagaagacacctttgatatttagtt |
119 |
Q |
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|||||||| |||||| |||||||||||||||| |||||| | ||| ||| ||||||||||||||||||||||| ||| || ||| || ||| | |||| |
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| T |
1742289 |
gaactgcactatccatgtctttccttcttccccgtcttgtccgagcctctccaggttcagaatttggatccaccagagcagccactttcgat-tgcagtt |
1742387 |
T |
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| Q |
120 |
cacctattagcactctt |
136 |
Q |
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||||||||||||||||| |
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| T |
1742388 |
cacctattagcactctt |
1742404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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