View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_33 (Length: 324)
Name: NF13314_low_33
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 41909363 - 41909092
Alignment:
| Q |
19 |
aacaaggtgtatattaatattaataagccaagtttttggccacttacccaatgtggcgctaattcttggaaaacttaatcagtttggtctaaaagaagaa |
118 |
Q |
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| T |
41909363 |
aacaaggtgtatattaatattaataagccaagtttttggccacttacccaatgtggcactaattcttggaaaacttaatcagtttggtctaaaagaagaa |
41909264 |
T |
|
| Q |
119 |
tgctactctatatactctagcgtagaaaggactcagcgctagtataactaatcacaagaaattgttggtattagtaaaactaatcacaaggtgtatacat |
218 |
Q |
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| T |
41909263 |
tgctactctatatactctagcgtagaaaggactcggcgctagtataactaatcacaagaaattgttggtattagtaaaactaatcacaaggtgtatacat |
41909164 |
T |
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| Q |
219 |
atatactataggagaagcggtatttatacaacaatttaatgataattttttaataattttctctcttatact |
290 |
Q |
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| T |
41909163 |
atatactataggagaagcggtatttatacaacaatttgatgataactttttaataattttctctctcatact |
41909092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 40258214 - 40258265
Alignment:
| Q |
239 |
tatttatacaacaatttaatgataattttttaataattttctctcttatact |
290 |
Q |
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| T |
40258214 |
tatttatacaaccattttatgataatttttgaataactttctctctcatact |
40258265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 7990088 - 7990139
Alignment:
| Q |
239 |
tatttatacaacaatttaatgataattttttaataattttctctcttatact |
290 |
Q |
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| T |
7990088 |
tatttgtacatctattttatgataattttttgataattttctctcttatact |
7990139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 11635626 - 11635669
Alignment:
| Q |
239 |
tatttatacaacaatttaatgataattttttaataattttctct |
282 |
Q |
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| T |
11635626 |
tatttgtacaacaattttatgataattttttaataactttctct |
11635669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 6408134 - 6408179
Alignment:
| Q |
237 |
ggtatttatacaacaatttaatgataattttttaataattttctctc |
283 |
Q |
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| T |
6408134 |
ggtatttatacaaccatttaatgataatttttaaat-attttctctc |
6408179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 37515927 - 37515976
Alignment:
| Q |
241 |
tttatacaacaatttaatgataattttttaataattttctctcttatact |
290 |
Q |
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|||||||||| |||| ||||||||||||| | |||||||||||| ||||| |
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| T |
37515927 |
tttatacaactattttatgataattttttgacaattttctctctcatact |
37515976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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