View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_34 (Length: 324)
Name: NF13314_low_34
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 36646972 - 36646661
Alignment:
| Q |
1 |
cccacagtagcattttttaacccactatgtccaatctattgacaaaatgttggttcaaagctatcatgtgaataactttagtcnnnnnnnnnnnnnnnnc |
100 |
Q |
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| T |
36646972 |
cccacagtagcattttttaacccactaggtccaatctattgacaaaagggtggttcaaagctatcatgtgaataactttagtctttatttttattttttc |
36646873 |
T |
|
| Q |
101 |
cttcctgtgtatttattctgttttctattcatataaataaatgatacctgaattaagaagattaatgcatcagaaaatacaatatggcaaagtcatcact |
200 |
Q |
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| T |
36646872 |
cttcctgtgtttttattctgttttctgttcatataaataaatgatgcctgaattaagaagattaatgtatcagaaaatacaagatggcaaagtcatcact |
36646773 |
T |
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| Q |
201 |
cacaataacacttgtgattctcttctgtggtttaactcttgcatcaagaacaaaaatcttacccttaagcactattactgcattggcaccagaactcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36646772 |
cacaataacacttgtgattctcttctgtggtttaactcttgcatcaagaacaaaaatcttacccttaagcactattactgcattggcaccagaactcaat |
36646673 |
T |
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| Q |
301 |
gatggtgtttgt |
312 |
Q |
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|||||||||||| |
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| T |
36646672 |
gatggtgtttgt |
36646661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 106 - 308
Target Start/End: Original strand, 1018851 - 1019049
Alignment:
| Q |
106 |
tgtgtatttattctgttttctattcatataaataaatgatacctgaattaagaagattaatgcatcagaaaatacaatatggcaaagtcatcactcacaa |
205 |
Q |
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||||| |||||| |||||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||| |
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| T |
1018851 |
tgtgtttttattatgttttctgttcatataaataa----tgcctgaatgaagaagattaaaacatcagaaaatacaagatggcaaagtcatcactctcaa |
1018946 |
T |
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| Q |
206 |
taacacttgtgattctcttctgtggtttaactcttgcatcaagaacaaaaatcttacccttaagcactattactgcattggcaccagaactcaatgatgg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1018947 |
taacacttgtgattctcttctgtggtttaactcttgcatcaagaacaaaaatcttacccttaagcactattactgcattggcaccagaactcaatgatgg |
1019046 |
T |
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