View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13314_low_42 (Length: 267)

Name: NF13314_low_42
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13314_low_42
NF13314_low_42
[»] chr3 (4 HSPs)
chr3 (39-234)||(50301846-50302045)
chr3 (151-224)||(10773485-10773558)
chr3 (151-224)||(32862071-32862144)
chr3 (151-224)||(4317467-4317540)
[»] chr4 (7 HSPs)
chr4 (151-224)||(39264737-39264810)
chr4 (151-224)||(2737723-2737796)
chr4 (151-224)||(48997058-48997131)
chr4 (152-224)||(38372657-38372729)
chr4 (151-224)||(16041378-16041451)
chr4 (151-224)||(12391334-12391407)
chr4 (151-224)||(45065581-45065654)
[»] chr2 (6 HSPs)
chr2 (19-111)||(23757861-23757951)
chr2 (151-224)||(23757712-23757785)
chr2 (19-76)||(33522523-33522580)
chr2 (177-235)||(12197420-12197478)
chr2 (154-199)||(33522370-33522415)
chr2 (113-147)||(23757801-23757835)
[»] chr1 (2 HSPs)
chr1 (154-224)||(3324902-3324972)
chr1 (151-224)||(48315108-48315181)
[»] chr5 (2 HSPs)
chr5 (151-233)||(37344574-37344656)
chr5 (47-112)||(37344692-37344757)
[»] chr8 (4 HSPs)
chr8 (19-76)||(42476361-42476418)
chr8 (154-224)||(28733228-28733298)
chr8 (156-199)||(42476528-42476571)
chr8 (152-224)||(10227238-10227309)
[»] chr6 (1 HSPs)
chr6 (144-213)||(23112034-23112103)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 234
Target Start/End: Complemental strand, 50302045 - 50301846
Alignment:
Q  39 ggatcgaaattgaaatgaaattagggtttagaaaagggnnnnnnnn----gtgtgaaaatgaatttttgtgtgagaaaatgtaatggttcagtttagtta 134  Q
    |||| |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50302045 ggatagaaattgaaatgaaattagggtttagaaaagggttttttttttttgtgtgaaaatgaatttttgtgtgagaaaatgtaatggttcggtttagtta 50301946  T
Q  135 attaagtttggttcgattcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaattttggttcgattt 234  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||| ||| |||||    
T  50301945 attaagtttggttcggtttggttcagttaatgaactgtttttaaaataatggttcggatcaataaccaatgtaatggttcagttaattttagtttgattt 50301846  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 10773558 - 10773485
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||||||||||||||  |  ||||||||||||||||||| | ||||||||||||  |||||||| |||||||||    
T  10773558 ttcggttcagttaattgaccgtttttaaaataacggttcggttcaataatcaataaaatggttcagttaatttt 10773485  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 32862144 - 32862071
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    ||||||||||||| ||||||||||||||||||||||||  | |||||||  |||| |||| ||| |||||||||    
T  32862144 ttcggttcagttagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaatttt 32862071  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 4317467 - 4317540
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||| ||||||||||||| ||| || |||||| |||||||| ||||||  || | ||| |||||||||||||||    
T  4317467 ttcgattcagttaatgaactgtcttcaaaatagcggttcagttcaatatccactataaaggttcggttaatttt 4317540  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 39264810 - 39264737
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  39264810 ttcggttcagttaatgaactgtttttaaaataatggttcagttcaataaccaatgtaatggttcggttaatttt 39264737  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 2737723 - 2737796
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||    
T  2737723 ttcggttcagttaatgatttgtttttaaaataacggttcggttcaataaccaatgtaatggttcagttaatttt 2737796  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 48997058 - 48997131
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||| ||||||||||||| |||||||||||||||||||  | | ||||| ||||||| ||||||||||||||||    
T  48997058 ttcgattcagttaatgaactgtttttaaaataacggtttggtttaataaccaatgtagtggttcggttaatttt 48997131  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 38372657 - 38372729
Alignment:
Q  152 tcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||| ||||| ||| |||| |||||||||    
T  38372657 tcggttcagttaatgaactgtttttaaaataactgttcggttcaataaccaatgcaatagttcagttaatttt 38372729  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 16041451 - 16041378
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||||||||||||||||| ||| || |||||| |||||||| ||||||  |||| ||| |||||||||||||||    
T  16041451 ttcggttcagttaatgaactgtcttcaaaatagcggttcagttcaatatccaatataaaggttcggttaatttt 16041378  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 12391334 - 12391407
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||||||| ||||||||| || | | |||||| |||||||| ||||||  |||| ||| |||||||||||||||    
T  12391334 ttcggttcggttaatgaactggtctcaaaatagcggttcagttcaatatccaatataaaggttcggttaatttt 12391407  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 45065654 - 45065581
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||| ||||||||||||| ||||||||||||||||  ||   ||||||| |||||||||| ||| | |||||||    
T  45065654 ttcgattcagttaatgaactgtttttaaaataacgactcgattcaataaccaatgtaatgattcagctaatttt 45065581  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 23757951 - 23757861
Alignment:
Q  19 cagagaagaagagttggattggatcgaaattgaaatgaaattagggtttagaaaagggnnnnnnnngtgtgaaaatgaatttttgtgtgagaa 111  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  23757951 cagagaagaagaggtggattagattgaaattgaaatgaaattagggtttagaaaaggg--ttttttgtgtgaaaatgaatttttgtgtgagaa 23757861  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 23757785 - 23757712
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    ||||||||||||||| ||||||| |||||||||||| || | ||||||| ||||||||||||||  ||||||||    
T  23757785 ttcggttcagttaataaattgttcttaaaataacggatcggttcaataaccaatgtaatggttcaattaatttt 23757712  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 33522580 - 33522523
Alignment:
Q  19 cagagaagaagagttggattggatcgaaattgaaatgaaattagggtttagaaaaggg 76  Q
    ||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||    
T  33522580 cagagaagaagaggtgaattggattgaaattgaaatgaaagtagggtttagaaaaggg 33522523  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 12197478 - 12197420
Alignment:
Q  177 aaaataacggttcagatcaataatcaatgtaatggttcggttaattttggttcgatttg 235  Q
    ||||||||||||| | ||||||| || ||||||||||||||||||||||||||| ||||    
T  12197478 aaaataacggttcggttcaataaccagtgtaatggttcggttaattttggttcggtttg 12197420  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 33522415 - 33522370
Alignment:
Q  154 ggttcagttaatgaattgtttttaaaataacggttcagatcaataa 199  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||||    
T  33522415 ggtttagttagtgaattgtttttaaaataacggttcagttcaataa 33522370  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 23757835 - 23757801
Alignment:
Q  113 atgtaatggttcagtttagttaattaagtttggtt 147  Q
    |||||||||||| ||||||||||||||||||||||    
T  23757835 atgtaatggttcggtttagttaattaagtttggtt 23757801  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 3324902 - 3324972
Alignment:
Q  154 ggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| |||||||||    
T  3324902 ggttcagttaatgaattgtttttaaaataacggttcggtttaataaccaatgtaatggttcagttaatttt 3324972  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 48315108 - 48315181
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    |||||||||||||||||| ||||||||||||||| ||||   | |||||||||||||||||||| |||||||||    
T  48315108 ttcggttcagttaatgaactgtttttaaaataactgttcgatttaataatcaatgtaatggttcagttaatttt 48315181  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 37344656 - 37344574
Alignment:
Q  151 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaattttggttcgatt 233  Q
    |||||||| ||||||||| |||||||||||||||||||| | ||||||| |||||||||| ||| ||||||||| ||| ||||    
T  37344656 ttcggttcggttaatgaactgtttttaaaataacggttcggttcaataaccaatgtaatgattcagttaattttagtttgatt 37344574  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 37344757 - 37344692
Alignment:
Q  47 attgaaatgaaattagggtttagaaaagggnnnnnnnngtgtgaaaatgaatttttgtgtgagaaa 112  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  37344757 attgaaatgaaattagggtttagaaaagggttctttttgtgtgaaaatgaatttttgtgtgagaaa 37344692  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 42476361 - 42476418
Alignment:
Q  19 cagagaagaagagttggattggatcgaaattgaaatgaaattagggtttagaaaaggg 76  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    
T  42476361 cagagaagaagaggtgaattggattgaaattgaaatgaaattagggtttagaaaaggg 42476418  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 28733298 - 28733228
Alignment:
Q  154 ggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    ||||||||||||||| |||||||||||||||||||| | | ||||| |||||||||| ||| |||||||||    
T  28733298 ggttcagttaatgaactgtttttaaaataacggttctgtttaataaccaatgtaatgattcagttaatttt 28733228  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 42476528 - 42476571
Alignment:
Q  156 ttcagttaatgaattgtttttaaaataacggttcagatcaataa 199  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  42476528 ttcagttagtgaattgtttttaaaataacggttcagttcaataa 42476571  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 10227238 - 10227309
Alignment:
Q  152 tcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 224  Q
    ||||| ||||| ||||| | ||||||||| |||||||| | ||||||| |||||||||||||| |||||||||    
T  10227238 tcggtacagttgatgaactttttttaaaa-aacggttcggttcaataaccaatgtaatggttcagttaatttt 10227309  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 23112034 - 23112103
Alignment:
Q  144 ggttcgattcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggtt 213  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||| | ||||||| || ||||||||||    
T  23112034 ggttcggttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtt 23112103  T

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