View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_43 (Length: 266)
Name: NF13314_low_43
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 8061277 - 8061050
Alignment:
| Q |
16 |
atgagagtagttaaaagatgtgaacacggcttaacattgagtaatctcaaaagctgtgtttcggaaatttgagatttaaattaagacataatattatata |
115 |
Q |
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| T |
8061277 |
atgagagtagttaaa-gatgtgaacacggcttaacattgagtaatctcaaaagctgtgtttcggaaatttgagatttaa-ttaagacataatattatata |
8061180 |
T |
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| Q |
116 |
agttcaacaagattttcaattctaatagagtgaataaataagctaactagagattatgtattttcaaaagcacttacttaaaacaatgcattaatttttt |
215 |
Q |
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| T |
8061179 |
agtccaacaagattttcaattctaatagagtgaataaataagctaactagagaatatgtattttcaaaagca----cttaaaacaatgcattaatttttt |
8061084 |
T |
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| Q |
216 |
attcagtattttcaacagtatcccatctattttt |
249 |
Q |
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| T |
8061083 |
attcagtattttcaacagtatcccatctattttt |
8061050 |
T |
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