View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_48 (Length: 246)
Name: NF13314_low_48
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31775712 - 31775485
Alignment:
| Q |
1 |
attgtaactcttgatcggttctttttatgtgttaaaaatcgatttggttgtaactttcgacaatgtatttttaataaagtgagcaattttgagatgttta |
100 |
Q |
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| T |
31775712 |
attgtaactcttgatcggctctttttatgtgttaaaaatcgatttggttgtaactttcgacaatatatttttagtaaagtgagcaattttgagatgtcta |
31775613 |
T |
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| Q |
101 |
aagagcaattgtccaaatgataaacaattctgatatgttggtccaagcacaccctaagcaagtatttgggttaaataagatgatcttcaagccataaaaa |
200 |
Q |
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| T |
31775612 |
aaaagcaattgtccaaatgataaacaattctgatatgttggtccaagcacacactaagcaagtatttgggttaaataagatgatcttcaagccataaaaa |
31775513 |
T |
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| Q |
201 |
taaaataaatgctaacatgtgtcataag |
228 |
Q |
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| T |
31775512 |
taagataaatgctaacatgtgtcataag |
31775485 |
T |
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Back To:
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 19986940 - 19986991
Alignment:
| Q |
66 |
tatttttaataaagtgagcaattttgagatgtttaaagagcaattgtccaaa |
117 |
Q |
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| T |
19986940 |
tattttcaataaagtgagcaattttgagatgcctaaatagcaattgtccaaa |
19986991 |
T |
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