View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_5 (Length: 615)
Name: NF13314_low_5
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 596
Target Start/End: Complemental strand, 39396515 - 39395940
Alignment:
| Q |
19 |
agatttgtccaaaatacggcactcgcagcatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgca |
118 |
Q |
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| T |
39396515 |
agatgtgtccaaaatacggcacttgcaacatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgca |
39396416 |
T |
|
| Q |
119 |
ttgttgtgtaagaaactctcaaagaagattgataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtac |
218 |
Q |
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| T |
39396415 |
tttttgtgtaagaaactctcaaagaagattgataagtactccatgcc-ttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtac |
39396317 |
T |
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| Q |
219 |
caaatatgaatctcattgttgtgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattt |
318 |
Q |
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| T |
39396316 |
cagatatgaatctcattgtcatgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattt |
39396217 |
T |
|
| Q |
319 |
tctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaaga |
418 |
Q |
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| T |
39396216 |
tctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaaga |
39396117 |
T |
|
| Q |
419 |
aacaaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaactatgtacacannnnnnnnnaaacaaaaattatgtacacattaaac |
518 |
Q |
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| T |
39396116 |
aaccaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaattatgtacaca-ttttttttaaacaaaaattatgtacacattaaac |
39396018 |
T |
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| Q |
519 |
aaatgcacaaagtaaaacaatatgaacaatattacagtctaattgtatttagtcactgtgtaatttgcattacgtttg |
596 |
Q |
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| T |
39396017 |
aaatgcacaaagtaaaacaatatgaacagtattacagtctaattgtatttagtcactgtgtaatttgcattacgtttg |
39395940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
94 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
153 |
Q |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
139 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
213 |
Q |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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