View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_50 (Length: 239)
Name: NF13314_low_50
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 23016972 - 23017181
Alignment:
| Q |
12 |
agaagcatataagaaaaagtgtaaaagaaatttatgagcgagcaagagcaaagtgtaacctgaagaggagaaatgcgaaaatgggctgcaatagaagccc |
111 |
Q |
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| T |
23016972 |
agaagcatataagaaaaagtgtaaaagaaatttatgagcgagcaagagcaaagtgtaacctgaagaggagaaatgcgaaaatgggctgcaatagaagccc |
23017071 |
T |
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| Q |
112 |
ttgactgtggagaaacagacacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctga |
211 |
Q |
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| T |
23017072 |
ttgactgtggagaaacagacacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctga |
23017171 |
T |
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| Q |
212 |
tgtcacacat |
221 |
Q |
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| T |
23017172 |
tgtcacacat |
23017181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 54914539 - 54914369
Alignment:
| Q |
51 |
gagcaagagcaaagtgtaacctgaagaggagaaatgcgaaaatgggctgcaatagaagcccttgactgtggagaaacagacacaatcactgtctttcctt |
150 |
Q |
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| T |
54914539 |
gagcaagagcaaagtgccacctggacaggagaaatgccaaaatgcgttgcaatagaagtccttgattgtggagaaacagacacaatcactgcctttcctt |
54914440 |
T |
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| Q |
151 |
cattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcacacat |
221 |
Q |
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| T |
54914439 |
tattaatattggacagaaactcatccaaaccttgcttctccagcataaccgtctctgctgatgtgacacat |
54914369 |
T |
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