View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13314_low_54 (Length: 227)
Name: NF13314_low_54
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_54 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 3811671 - 3811858
Alignment:
| Q |
23 |
caagtgcataaccataatataagnnnnnnngacaaaaatagctcacaaattgtgattcgtcacttcatgcttatatctcctctactttcttgacatacaa |
122 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3811671 |
caagtgcataaccataatataagaaaaaaagacaaaaatagctcacaaattgtgattcgtcacttcatgcttatatctcctctactttcttgacatacaa |
3811770 |
T |
|
| Q |
123 |
ctacctcaagtccctcaagagactagagatattatggtgaagaaaacttaagtaattttttacatttatactaactttccacttcttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3811771 |
ctacctcaagtccctcaagagactagagatattatggtgaagaaaacttaagtaattttttacatttatactaactttccacttcttc |
3811858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University