View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_8 (Length: 544)
Name: NF13314_low_8
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Original strand, 6990726 - 6991236
Alignment:
| Q |
15 |
gacatcatcggcacatgttacagatgatttacctgttcattaacacaaaataaaatcagacaccgatgatttctgttgtaacagttttaaacacataagt |
114 |
Q |
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| T |
6990726 |
gacatcataggcccatgttacagatgatttacctgttcattaacacaaaataaaatcagacaccgatgatttctgttgtaacagttttaaacacataagt |
6990825 |
T |
|
| Q |
115 |
caatgccaaaaatatatatgcaagtgtgcatgttctttctcagtgctattacatgcatgtagcagatcactaacatttgttctagttctagggagaaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6990826 |
caatgccaaaaatatatatgcaagtgtgcatgttctttctcagtgctattacatgcatgtagcagatcactaacattttttctagttctagggagaaaac |
6990925 |
T |
|
| Q |
215 |
tgtttgtgtactattgcatcttaaatttgtcgcattaaatgcatggatgcatggatcaacaataggataaaaactagcaagaaataggtaaaacagttta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6990926 |
tgtttgtgtactattgcatcttaaatttgtcgcattaaatgcatggatgcatggatcaacaataggataaaaactagccagaaataggtaaaacagttta |
6991025 |
T |
|
| Q |
315 |
ctcaccagaattgccttgattagaagacctgcaaaatcacaagaaaaagaaaaggttacaaacaggcaccataaaatagaattaactagtatactagccc |
414 |
Q |
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| T |
6991026 |
ctcaccagaattgccttgattagaagacctgcaaaatcacaagaaaaagaaaaggttacaaacaggcaccataaaatagaattaactagtatactagccc |
6991125 |
T |
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| Q |
415 |
taagaaataattaattgatctaccaaatcattctagcttgtaggtacgatccaaccattttcaggatagtatattaagtccatataaagcttcaagttta |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6991126 |
taagaaataattaattgatctaccaaatcattctagcttgtaggtacgatccaaccattttcaggatagtatattaagtccatttaaagcttcaagttta |
6991225 |
T |
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| Q |
515 |
tatatcgtcac |
525 |
Q |
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| T |
6991226 |
taaatcgtcac |
6991236 |
T |
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