View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_9 (Length: 512)
Name: NF13314_low_9
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 39680891 - 39680412
Alignment:
| Q |
20 |
tagttgactacacgattctaatttcggacagatctagaacataacaattcattgcttgtgatatttagcatccctataacactcttgataaaactttaca |
119 |
Q |
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| T |
39680891 |
tagttgactactcgattctaatttcggacagatctagaacataacaattcattgcttgtgatatttagcatccctataacactcttgataaaactttaca |
39680792 |
T |
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| Q |
120 |
atacattccagcaagatactcaataattaaagaagaaaacactcca--gtgtggtattgtgtctcctatatttattatcagtaacaattcaaatatggta |
217 |
Q |
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| T |
39680791 |
atacattccaccaagatactcaataattaaagaagaaaacactccacagtgtggtattgtgtctcctatatttattatcagtaacaattcaaatatggta |
39680692 |
T |
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| Q |
218 |
agaattaagacatgtctgaaaatatggtaaatagatatagctaaagttagtaaatctaaagcattacaacaaatcaaagtcgtgacaggggatactaata |
317 |
Q |
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| T |
39680691 |
agaattaagacatatctgaaaatatggtaaatagatatagctaaagttagtaaatctaaagcattacaacaaatcaaagtcgtgacaggggatactaata |
39680592 |
T |
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| Q |
318 |
ctatagtatagttaattaactgcattgaacattctatttagtcttgcgatggatattgatatctaaagtcccaaatagatttttcttcctcctgaccatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680591 |
ctatagtatagttaattaactgcattgaacattctatttagtcttgcgatggatattgatatctaaagtcccaaatagatttttcttcctcctgaccatg |
39680492 |
T |
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| Q |
418 |
tagattatgctcttgattttgagtaaaatccatgttgttattaccttttaccatttcgagtgccgcttcgaattcatgat |
497 |
Q |
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| T |
39680491 |
tagattatgctcttgattttgagtaaaatccatgttgttattacctttcaccatttcgagtgccgcttcgaattcatgat |
39680412 |
T |
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