View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_high_3 (Length: 462)
Name: NF13315_high_3
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 246 - 454
Target Start/End: Original strand, 44567494 - 44567702
Alignment:
| Q |
246 |
atatcacaaatataccatgtctaactttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
345 |
Q |
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| T |
44567494 |
atatcacaaatataccatgtctaattttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
44567593 |
T |
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| Q |
346 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
445 |
Q |
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| T |
44567594 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
44567693 |
T |
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| Q |
446 |
gttcatctc |
454 |
Q |
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|||| |||| |
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| T |
44567694 |
gttcttctc |
44567702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 44567247 - 44567429
Alignment:
| Q |
1 |
ttgttgcatttgcatctacctttgttactccatattgtgacgaacagccgttcaacagaattagaaacattagctaccttgatacacccttgagcttatt |
100 |
Q |
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| T |
44567247 |
ttgttgcatttgcatctacctttgttactccatattgtgacgaacagccgttcaacagaattagaaacattagctaccttgatacacccttgagcttatt |
44567346 |
T |
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| Q |
101 |
tg--tttgtgttctttatttagtttatttgttaatcttgaaggacgccttttccttcctcctagtagtacttcattgcttcat |
181 |
Q |
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| T |
44567347 |
tgtttttttgttctttatttagtttatttgttaatcttgaaggacgccttttccttcctcctagtagtacttcattgcttcat |
44567429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 260 - 454
Target Start/End: Complemental strand, 36029299 - 36029104
Alignment:
| Q |
260 |
ccatgtctaactttacttttactatat-aacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtg |
358 |
Q |
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|||||| ||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
36029299 |
ccatgtttaattttgcttttactatattaacagggaaggttggagggttcattgcttcaattcctggagtcatggttgctggtctcctctgctttatgtg |
36029200 |
T |
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| Q |
359 |
ggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcattgttcatctc |
454 |
Q |
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| T |
36029199 |
ggcaatgcttacagcattgggcttgtccaatctacgctatagtgaggctggaagctctcgcaatatcataataattggattatcattgttcttctc |
36029104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 300 - 436
Target Start/End: Original strand, 20126433 - 20126569
Alignment:
| Q |
300 |
ggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctata |
399 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||| | |||||||| ||||||||||| | |
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| T |
20126433 |
ggagggttcattgcttcaattcctgaagttatggttgctggtctcctctgcttcatgtgggcaatgctcacagcttggggcttgtcaaatctacgctaca |
20126532 |
T |
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| Q |
400 |
ctgagaccggaagctctcgaaatatcattatagttgg |
436 |
Q |
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|||| ||||||||||||| |||||||| |||||||| |
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| T |
20126533 |
gtgaggccggaagctctcgcaatatcatcatagttgg |
20126569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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