View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_high_5 (Length: 388)
Name: NF13315_high_5
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 6235656 - 6235414
Alignment:
| Q |
19 |
gaataaattatattgtctccttataagcacaatggtactaggagtgaggcatctgtattgagatttaatggatcatcatgtgctattctgctacctaact |
118 |
Q |
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| T |
6235656 |
gaataaattatattgtctccttataagcacaatggtactaggagtgaggcatctgtattgagatttaatggatcatcatgtgctattctgctacctaact |
6235557 |
T |
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| Q |
119 |
attaataatttgatatgcaactcaaattggtgtaaatcctagccagtgaacataannnnnnnctaactgttgatatcaaaaagaaatttatatggaaatg |
218 |
Q |
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| T |
6235556 |
attaataatttgatatgcaactcaaattggtgtaaatcctagccagtgaacataattttttt-taaccgttgatatcaaaaagaaatttatatgaaaatg |
6235458 |
T |
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| Q |
219 |
tgtatgttttatgattgagtacatttatatttaaagcataatca |
262 |
Q |
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| T |
6235457 |
agtatgttttatgattgagtacatttatatttaaagcataatca |
6235414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 2973215 - 2973296
Alignment:
| Q |
181 |
ctaactgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatatttaaagcataatca |
262 |
Q |
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| T |
2973215 |
ctaactgttgatatcaaaaagaaatttatatgaaaatgagtatgttttatgattgaggacatttatatttaaagcataatca |
2973296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 2975469 - 2975539
Alignment:
| Q |
186 |
tgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatatttaaagcataatca |
262 |
Q |
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| T |
2975469 |
tgttgatatcaaaaagaaat------ggaaatgagtatgttttatgattgaggacatttatatttaaagcataatca |
2975539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 2972852 - 2972908
Alignment:
| Q |
34 |
tctccttataagcacaatggtactaggagtgaggcatctgtattgagatttaatggat |
91 |
Q |
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| T |
2972852 |
tctccttctaagcataatgata-taggagtgaggcatctgtattgagatttaatggat |
2972908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 6026831 - 6026670
Alignment:
| Q |
89 |
gatcatcatgtgctattctgctacctaacta----ttaataatttgatatgcaactcaaattggtgtaaatcctagccagtgaacataannnnnnnctaa |
184 |
Q |
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||||| ||||||||||||| ||||||||||| |||||||| ||||| |||| ||||| |||||| ||||||| | ||||| |||| |||| |
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| T |
6026831 |
gatcaccatgtgctattctactacctaactaactattaataatctgataggcaattcaaactggtgtgaatccta-catgtgaaaataacaaatatctaa |
6026733 |
T |
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| Q |
185 |
ctgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatattt |
250 |
Q |
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|||||||| ||||||||||||||||||||||| ||| | ||| ||||||||||| ||||||| |
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| T |
6026732 |
ttgttgataataaaaagaaatttatatggaaatgagtacgcttt---attgagtacatatatattt |
6026670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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