View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13315_high_7 (Length: 281)
Name: NF13315_high_7
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 20171131 - 20170879
Alignment:
| Q |
13 |
tcatcaaactcgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20171131 |
tcatcaaactcgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccacc |
20171032 |
T |
|
| Q |
113 |
gaatcatttgcatgtgttctgtttctccaagatgggtttctctccttgtctctcagttgctgtcacttttaattactcctcggtctcatatacatatatc |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20171031 |
gaatcatttgcatgtgctctgtttctccaagatgggtttctctccttgtctctcagttgctgtcacttttaattactcctcggtctcatatacatatatc |
20170932 |
T |
|
| Q |
213 |
tcatacatactcacttggtcgcatattatatgatgttttaacaaacaaacaaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20170931 |
tcatacatactcacttggtcgcatattatatgatgttttaacaaacaaacaaa |
20170879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 44392841 - 44392589
Alignment:
| Q |
13 |
tcatcaaactcgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44392841 |
tcatcaaactcgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccacc |
44392742 |
T |
|
| Q |
113 |
gaatcatttgcatgtgttctgtttctccaagatgggtttctctccttgtctctcagttgctgtcacttttaattactcctcggtctcatatacatatatc |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44392741 |
gaatcatttgcatgtgctctgtttctccaagatgggtttctctccttgtctctcagttgctgtcacttttaattactcctcggtctcatatacatatatc |
44392642 |
T |
|
| Q |
213 |
tcatacatactcacttggtcgcatattatatgatgttttaacaaacaaacaaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44392641 |
tcatacatactcacttggtcgcatattatatgatgttttaacaaacaaacaaa |
44392589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University