View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_low_11 (Length: 375)
Name: NF13315_low_11
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 34593579 - 34593238
Alignment:
| Q |
20 |
atatgaactaataaccaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactagaaagacaaaagcattgctttcttc |
119 |
Q |
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| T |
34593579 |
atatgaattaataactaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactagaaagacaaaagcattgctttcttc |
34593480 |
T |
|
| Q |
120 |
tatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgat |
219 |
Q |
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| T |
34593479 |
tatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgcagacaaactaggagttcaaggaaagaaagtgaaaagtactaatgat |
34593380 |
T |
|
| Q |
220 |
ttggaggtaattttcttgttttttgatcccatgatttcatacactatcc--nnnnnnnaataaaatttttgaggtaggcgttagaggatggaagttctcc |
317 |
Q |
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|||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34593379 |
ttggaggtaactttcttgt-ttttgatcccttgatttcatacactatcctttttttttaataaaatttttgaggtaggcggtagaggatggaagttctcc |
34593281 |
T |
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| Q |
318 |
gaggtgccagcaaccagttgagatgtcggtgattcctcttgat |
360 |
Q |
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| T |
34593280 |
gaggtgccagcaaccagttgagatgtcggtgtttcctcttgat |
34593238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
| Q |
171 |
tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
227 |
Q |
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| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
34577609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 34577794 - 34577750
Alignment:
| Q |
20 |
atatgaactaataaccaactcggaagttattgcagtaaaccaagg |
64 |
Q |
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||||||| | |||| |||||| ||||||||||||||||||||||| |
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| T |
34577794 |
atatgaattgataagcaactcagaagttattgcagtaaaccaagg |
34577750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
| Q |
168 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
227 |
Q |
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| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32589846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
| Q |
168 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
227 |
Q |
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| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32600294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
| Q |
170 |
ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
232 |
Q |
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| T |
24884037 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 32590026 - 32589981
Alignment:
| Q |
21 |
tatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
66 |
Q |
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|||||| | |||| |||||| ||||||||||||||||||||||||| |
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| T |
32590026 |
tatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32589981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 32600474 - 32600429
Alignment:
| Q |
21 |
tatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
66 |
Q |
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|||||| | |||| |||||| ||||||||||||||||||||||||| |
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| T |
32600474 |
tatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32600429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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