View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_low_12 (Length: 326)
Name: NF13315_low_12
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 489132 - 488836
Alignment:
| Q |
13 |
agcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattgtgatttccaacggtgtcacttatgtaaattgga |
112 |
Q |
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| T |
489132 |
agcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattgtgatttccaacagtgtcacttatgtaaattgga |
489033 |
T |
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| Q |
113 |
ccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttcccatccataagc |
212 |
Q |
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| T |
489032 |
ccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttcccatccataagc |
488933 |
T |
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| Q |
213 |
tattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgggtcagtgcaccagaaatcatcacctgtttt |
309 |
Q |
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| T |
488932 |
tattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgggtcagtgcaccagaaatcatcacctgtttt |
488836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 104 - 300
Target Start/End: Original strand, 34697039 - 34697235
Alignment:
| Q |
104 |
taaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttccca |
203 |
Q |
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| T |
34697039 |
taaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggattgaaacatgtcccaatctgggtgaatgaaatttccca |
34697138 |
T |
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| Q |
204 |
tccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccatatgggtcagtgcaccagaaatcatc |
300 |
Q |
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| T |
34697139 |
tccataaactgttataggcacaatgtaccatgtgacaaccttggagccaatatgtaccatttggatcaccagatggatcagaacaccagaaatcatc |
34697235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 305
Target Start/End: Original strand, 43637766 - 43637994
Alignment:
| Q |
77 |
ttgtgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
176 |
Q |
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| T |
43637766 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
43637865 |
T |
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| Q |
177 |
cccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccata |
276 |
Q |
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| T |
43637866 |
cccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttggatccccagc |
43637965 |
T |
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| Q |
277 |
tgggtcagtgcaccagaaatcatcacctg |
305 |
Q |
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| T |
43637966 |
tgggtccgtgcaccaaaaatcatcacctg |
43637994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 43976035 - 43975962
Alignment:
| Q |
164 |
gattgaaacatatcccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtg |
237 |
Q |
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| T |
43976035 |
gattgaaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
43975962 |
T |
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