View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_low_15 (Length: 245)
Name: NF13315_low_15
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 33026212 - 33026002
Alignment:
| Q |
21 |
aattaaaaatggaatatcaaagcagggtcctgagagcgagcatttgctccatcggatagtgtcgcatcttgctatggattcacttccaattaaacctctt |
120 |
Q |
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| T |
33026212 |
aattaaaaatggaatatcaaagcagggtcctgagagcgagcatttgctccatcggatagtgtcgcatcttgctatggattcacttccaattaaacctctt |
33026113 |
T |
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| Q |
121 |
ccaaagggagaatgggaaactctaccacgtgaattgcttttggacataatccgtaaggttgaagagagtgagacatcttggcctgcacgtgctgttgtcg |
220 |
Q |
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| T |
33026112 |
ccaaagggagaatgggaaactctaccacgtgaattgcttttggacataatccgtaaggttgaagaaagtgagacatcttggcctgcacgtgctgttgttg |
33026013 |
T |
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| Q |
221 |
tcgtctgtgct |
231 |
Q |
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| T |
33026012 |
tcgtctgtgct |
33026002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 33041214 - 33041101
Alignment:
| Q |
105 |
tccaattaaacctcttccaaagggagaatgggaaactctaccacgtgaattgcttttggacataatccgtaaggttgaagagagtgagacatcttggcct |
204 |
Q |
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| T |
33041214 |
tccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatccgaagggttgaaaagagtgagacattttggcct |
33041115 |
T |
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| Q |
205 |
gcacgtgctgttgt |
218 |
Q |
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| T |
33041114 |
gcacgtgctgttgt |
33041101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 32828755 - 32828832
Alignment:
| Q |
141 |
tctaccacgtgaattgcttttggacataatccgtaaggttgaagagagtgagacatcttggcctgcacgtgctgttgt |
218 |
Q |
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| T |
32828755 |
tctacctcctgaattgcttttggacataatccgtagggttgaagagagtgagacatcttggcctgctcgtgctgttgt |
32828832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 33020044 - 33019973
Alignment:
| Q |
141 |
tctaccacgtgaattgcttttggacataatccgtaaggttgaagagagtgagacatcttggcctgcacgtgc |
212 |
Q |
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| T |
33020044 |
tctaccacctgaattgcttttggatataatccgtagggttgaagagagtgcgacatcttggcctgcccgtgc |
33019973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 33030517 - 33030455
Alignment:
| Q |
155 |
tgcttttggacataatccgtaaggttgaagagagtgagacatcttggcctgcacgtgctgttg |
217 |
Q |
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| T |
33030517 |
tgcttttggacttaatccgtagagttgaagagatcgagacacctcggcctgcacgtgctgttg |
33030455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 7880246 - 7880206
Alignment:
| Q |
181 |
gaagagagtgagacatcttggcctgcacgtgctgttgtcgt |
221 |
Q |
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| T |
7880246 |
gaagagaccgagacttcttggcctgcacgtgctgttgtcgt |
7880206 |
T |
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