View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_low_3 (Length: 716)
Name: NF13315_low_3
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 384 - 698
Target Start/End: Original strand, 21869912 - 21870224
Alignment:
| Q |
384 |
atattcaaaaacagcggcactgagagaatgctcgtggcagctacttaatcttcaaaactggactcgaacggatcatcatttgtttt--tcaagtgcaacc |
481 |
Q |
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| T |
21869912 |
atattcaaaaacagcggcactga----atgctcgtggcaactacttaatcttcaaaactggactcgaacggatcatcattttttttcttcaagtgcatct |
21870007 |
T |
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| Q |
482 |
cttaaatatccatatgatttgtcattttgctttgctagcattctgaatggttagcgcggggtcctccaaataaaggtctcatgtaggaatcatcaaatct |
581 |
Q |
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| T |
21870008 |
cttagatatccatatgatttgtcattttgatttgctagcattctgaatggttagcgcggggtcctccaaataaaggtctcatgtaggaatcatcaaatct |
21870107 |
T |
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| Q |
582 |
cctccaatagtaatgtatggtgtacacaggactttcaaataacatggataaactttccttggcacggctaatgttggttgctgccgactcctcaaaggat |
681 |
Q |
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| T |
21870108 |
cctccaatagtaatgtatggtgtacacaggactttcaaataacatggataaactttccttggcacggctaatgttggttgctgccgactcctcaaaggat |
21870207 |
T |
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| Q |
682 |
agcaaaggtagattcat |
698 |
Q |
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| T |
21870208 |
agcaaaggtagattcat |
21870224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 21729645 - 21729487
Alignment:
| Q |
27 |
ccgtccacactcatgaacggacatggatgccggaataactaggatcataacatagttttctgtgccaaggattgaacataagaaccgttaaccatttcct |
126 |
Q |
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| T |
21729645 |
ccgtccacactcatgaacggacatggatgccggaataactaggatcataacatagttttctgtgccaacgattgaaaatttgaaccgttgaccatttccc |
21729546 |
T |
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| Q |
127 |
gtagaataacatagatcttgaccccatgtaagagatctgagatatactttgataccgaa |
185 |
Q |
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| T |
21729545 |
gtagaataacgtagatcttgacccaatatcagagatctgaggtagactttgataccgaa |
21729487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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