View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_low_4 (Length: 544)
Name: NF13315_low_4
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Complemental strand, 52609567 - 52609062
Alignment:
| Q |
20 |
gagacatcctcattctaatcacattgtactcatatgggtaaagacaaaattgggac------accaaacgtgatcatcccttggagcacaagcccaacaa |
113 |
Q |
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| T |
52609567 |
gagacctcctcattctaatcacattgtactcatatgggtaaacacaaaattgggactctttcaccaaacgtgatcatcacttggagcacaagcccaacaa |
52609468 |
T |
|
| Q |
114 |
aaataactgcctgaagttaatcgtcgatgttagagcactagaatctttaagtcttcgcctcaaagaacaagacaatgacttgtgggctaaggtaaaatga |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
52609467 |
aaataaccgcctgaagttaatcgtcgatgttagagcactagaatctttaagtcttcgcctcaaagaacaagacaatgacttgggggctagggtaaaatga |
52609368 |
T |
|
| Q |
214 |
ggtgcggaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgcagccgtctaaaagcccg |
313 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52609367 |
ggcgcgaaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgcagccgtctaaaagcacg |
52609268 |
T |
|
| Q |
314 |
tactaatgcaacgaacgaactgaaaattaatctaaaaatagaataaaccactgcaaaatcatgtgcacattctcatttcgagaaaagccttaaaatacct |
413 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52609267 |
tactaatgcaacgaacgaactgaa----aatctaaaaatagaataatccactgcaaaatcatgtgcacattctcatttcgagaaaagccttaaaacacct |
52609172 |
T |
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| Q |
414 |
tgagatatcattgactttgagtattggaatgtctttgttggtacatcccccacacccatgaagaaccgctgtcgtcaacaaccacatcaacttcctagca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52609171 |
tgagatatcattgactttgagtattggaatgtctttgttggtacat--cccacacccatgaagaaccgctgtcgtcaacaaccacatcaacttcctagca |
52609074 |
T |
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| Q |
514 |
tccacttcggcc |
525 |
Q |
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| T |
52609073 |
cccacttcggcc |
52609062 |
T |
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