View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_low_5 (Length: 501)
Name: NF13315_low_5
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 51828472 - 51828928
Alignment:
| Q |
18 |
tattccagagtgagaagatgaaccaggtgatgaccctgtagattgaaaagaaaaagaaaacttaaataaataacccagttgttgtaacggaatggagaaa |
117 |
Q |
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| T |
51828472 |
tattccagagtgagaagatgaaccaggtgatgaccctgtagattgaaaagaaaaagaaaacttaaataaataacccagttgttgtaaccgaatgaagaaa |
51828571 |
T |
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| Q |
118 |
aataagg-aaaatatctgaaatgacattatactctgtttttgaccaagttcatttaatgaaa-gactatttgagacttagtttgattcaacattctaaat |
215 |
Q |
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| T |
51828572 |
aataagggaaaatatctgaaatgacattatactctgtttttgaccaagttcatttaatgaaaagactatttgagacttagtttgattcaacattctaaat |
51828671 |
T |
|
| Q |
216 |
cccaaaattttaggaactgaattgaaaataataataataatattattatttttaccatttgtttcaggagtgtgaaggttaaagccttcgaaactaccct |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51828672 |
cccaaaattttaggaactgaattgaaaata------ataatattattttttttaccatttgtttcaggagtgtgaaggttaaagccttcgaaactaccct |
51828765 |
T |
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| Q |
316 |
tcttctccttgaggtattgcctcaatagattacaagtttgagaaaacgtaggtttctccgatgattttgtcagtttgttgccggataaaccagaaatgtc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51828766 |
tcttctccttgaggtattgcctcaatagattacaagtttgagaaaacgtaggtttctccgatgattttgtcagtttgttgccggataaaccagaaatgtc |
51828865 |
T |
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| Q |
416 |
cgatgaagtcgacattggaatctacagaagagaaagtgggttgaaggagttgttgtttgagaa |
478 |
Q |
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| T |
51828866 |
cgatgaagtcgacattggaatctacagaagagagagtgggttgaaggagttgttgtttgagaa |
51828928 |
T |
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