View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13315_low_8 (Length: 410)
Name: NF13315_low_8
Description: NF13315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13315_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 36996194 - 36995811
Alignment:
| Q |
10 |
acatcatcatataataatcaaatatcaaaatttcgtaaaaatgagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatg |
109 |
Q |
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| T |
36996194 |
acatcatcatataataatcaaatatcaaaatttcgtaaaaatgagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatg |
36996095 |
T |
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| Q |
110 |
gtagagagcatcttgacatgtttgaagcaatgatgatcaagtaacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatattt |
209 |
Q |
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| T |
36996094 |
gtagagagcatcttgacatgtttgatgcaatgatgatcaagtaacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatattt |
36995995 |
T |
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| Q |
210 |
ttaattcttattctgtaagagtcttataagtaaaacaattgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaat |
309 |
Q |
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| T |
36995994 |
ttaattcttattctgtaagagtcttataagtaaaacaattgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaat |
36995895 |
T |
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| Q |
310 |
gttgtcgtatacctaacgatgtatgtaacaatttccttt-nnnnnnnnnntgtatgcaacaaattcaaacaagcagctttaact |
392 |
Q |
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| T |
36995894 |
gttgtcgtatacctaacgatgtatgtaacaatttcctttaaaaaaaaaaatgtatgcaacaaattcaaacaagcagctttaact |
36995811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 36990346 - 36990280
Alignment:
| Q |
248 |
ttgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaatgttgt |
314 |
Q |
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| T |
36990346 |
ttgagaaaaataaatcatgcaattcaatttacatttaaagttgccgacatatattttatattgttgt |
36990280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 36990520 - 36990434
Alignment:
| Q |
130 |
tttgaagcaatgatgatcaagtaacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttat |
220 |
Q |
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| T |
36990520 |
tttgaagtaatgatgttcaagtaacaagttttccatc----atgtacaattgtacatactccccacaatgatatagattttcaattcttat |
36990434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 36990572 - 36990518
Alignment:
| Q |
248 |
ttgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattt |
303 |
Q |
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| T |
36990572 |
ttgaaaaaaata-atcatgcaattcaatttacatttaaagttgccgacatatattt |
36990518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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