View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_high_10 (Length: 325)
Name: NF13316_high_10
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 1230067 - 1229982
Alignment:
| Q |
24 |
tccccaaatttgttgtatgatggaaccaagggtacttaaattagagaagaagaaaacaatgaatcaatttgggttttggtttgatg |
109 |
Q |
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| T |
1230067 |
tccccaaatttgttgtatgatggaaccaagagtacttaaattagataagaagtaaacaatgaatgaatttgggttttggtttgatg |
1229982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 1229605 - 1229554
Alignment:
| Q |
249 |
ttaataataatattaataacttgtcattgccatgtcagcatccgttagtctc |
300 |
Q |
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| T |
1229605 |
ttaataataatattaatgacttgtcattgccacgtcagcatccgttagtctc |
1229554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 1230137 - 1230181
Alignment:
| Q |
24 |
tccccaaatttgttgtatgatggaaccaagggtacttaaattaga |
68 |
Q |
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| T |
1230137 |
tccccaaatttgttgtatgatggaaccaagagtacttaaattaga |
1230181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 1229868 - 1229829
Alignment:
| Q |
179 |
gggtattttagtaatttccttatttaccattaattttttg |
218 |
Q |
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| T |
1229868 |
gggtattttagtaatttccttatttatcattaattttttg |
1229829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 8079040 - 8078969
Alignment:
| Q |
38 |
gtatgatggaaccaagggtacttaaattagagaagaagaaaacaatgaatcaatttgggttttggtttgatg |
109 |
Q |
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| T |
8079040 |
gtatgatggaaccaagggtacttaaattagagaagaagaaaacaatgaatgaatttgggttttggtttgatg |
8078969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 8078917 - 8078776
Alignment:
| Q |
171 |
gtctcgctgggtattttagtaatttccttatttaccattaattttttgnnnnnnnn--caattaaatagaaaattctgactt--------aataataata |
260 |
Q |
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| T |
8078917 |
gtctcgctgggtattttaggtatttccttatttaccattaattttttggaaaaaaaaacaattaaatagaaaattctgacttgtttttataataataata |
8078818 |
T |
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| Q |
261 |
ttaataacttgtcattgccatgtcagcatccgttagtctctt |
302 |
Q |
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| T |
8078817 |
ttaatgacttgtcattgccacgtgagcatccgttagtctctt |
8078776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 8079467 - 8079514
Alignment:
| Q |
253 |
taataatattaataacttgtcattgccatgtcagcatccgttagtctc |
300 |
Q |
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| T |
8079467 |
taataataataatgacttgtcattgctatgtcagcatccgttagtctc |
8079514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 3253392 - 3253321
Alignment:
| Q |
40 |
atgatggaaccaagggtacttaaat-tagagaagaagaaaacaatgaatcaa-tttgggttttggtttgatg |
109 |
Q |
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| T |
3253392 |
atgatggaaccaagagtaaataaatctagagaagaagaaaataatgaatgaaatttgggttttggtttgatg |
3253321 |
T |
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