View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_high_17 (Length: 255)
Name: NF13316_high_17
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42875187 - 42874946
Alignment:
| Q |
1 |
tgatcttgatttgttaatttcatgtaggactcttcaattggactatttggacttgtatttgattcattggccacttagctctcaacctggaaagtttaca |
100 |
Q |
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| T |
42875187 |
tgatcttgatttgttaatttcatgtaggactcttcaattggactacttggatttgtatttgattcattggccacttagctctcagcctggaaagtttaca |
42875088 |
T |
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| Q |
101 |
tttccaattgatgtggcagatctcttaccatttgatgtgaagggtgtttgggaatccatggaagaaggattgaaacttggtctcactaaagctattggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
42875087 |
tttccaattgatgtggcagatctcttaccatttgatgtgaagggtgtttgggaatccatggaagaaggattgaaacttggactcaccaaagctattggag |
42874988 |
T |
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| Q |
201 |
ttagtaacttctccgtcaagaaacttgaaaatcttctctctg |
242 |
Q |
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| T |
42874987 |
ttagtaacttctctgtcaagaaacttgaaaatcttctctctg |
42874946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42884318 - 42884077
Alignment:
| Q |
1 |
tgatcttgatttgttaatttcatgtaggactcttcaattggactatttggacttgtatttgattcattggccacttagctctcaacctggaaagtttaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42884318 |
tgatcttgatttgttaatttcatgtaggactcttcaattggactacttggatttgtatttgattcattggccacttagctctcagcctggaaagtttaca |
42884219 |
T |
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| Q |
101 |
tttccaattgatgtggcagatctcttaccatttgatgtgaagggtgtttgggaatccatggaagaaggattgaaacttggtctcactaaagctattggag |
200 |
Q |
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| T |
42884218 |
tttccaattgatgtggcagatctcttaccatttgatgtgaagggtgtttgggaatccatggaagaaggattgaaacttggactcaccaaagctattggag |
42884119 |
T |
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| Q |
201 |
ttagtaacttctccgtcaagaaacttgaaaatcttctctctg |
242 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42884118 |
ttagtaacttctctgtcaagaaacttgaaaatcttctctctg |
42884077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42890114 - 42890355
Alignment:
| Q |
1 |
tgatcttgatttgttaatttcatgtaggactcttcaattggactatttggacttgtatttgattcattggccacttagctctcaacctggaaagtttaca |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42890114 |
tgatcttgatttgttaatttcatgtaggactcttcaattggactacttggatttgtatttgattcattggccacttagctctcagcctggaaagtttaca |
42890213 |
T |
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| Q |
101 |
tttccaattgatgtggcagatctcttaccatttgatgtgaagggtgtttgggaatccatggaagaaggattgaaacttggtctcactaaagctattggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
42890214 |
tttccaattgatgtggcagatctcttaccatttgatgtgaagggtgtttgggaatccatggaagaaggattgaaacttggactcaccaaagctattggag |
42890313 |
T |
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| Q |
201 |
ttagtaacttctccgtcaagaaacttgaaaatcttctctctg |
242 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42890314 |
ttagtaacttctctgtcaagaaacttgaaaatcttctctctg |
42890355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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