View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_high_3 (Length: 604)
Name: NF13316_high_3
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 131 - 596
Target Start/End: Original strand, 35380 - 35845
Alignment:
| Q |
131 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
230 |
Q |
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| T |
35380 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
35479 |
T |
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| Q |
231 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
330 |
Q |
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| T |
35480 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
35579 |
T |
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| Q |
331 |
gctaaactctgttggattctaccaagtattattctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
430 |
Q |
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| T |
35580 |
gctaaactctgttggattctaccaagtatttttctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
35679 |
T |
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| Q |
431 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
530 |
Q |
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| T |
35680 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
35779 |
T |
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| Q |
531 |
tttcatgtctattcttttgaaaaatgacaatttgtcacattgttttcaaactcgtatgttcatctc |
596 |
Q |
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| T |
35780 |
tttcatgtctattcttttgaaaaatgacaatttgtgacattgttttcaaactcgtatgttcatctc |
35845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 35265 - 35356
Alignment:
| Q |
24 |
atcatcgccaacaaacaactcatgtccaacaatggctatgttttcacttttggtcagccaccttctctcacacattcattcattgttgatgt |
115 |
Q |
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| T |
35265 |
atcatcgctaacaaacaactcatgtccaacaatggctatgttttcacttttggtcagccaccttctctcacacattcattcattgttgatgt |
35356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 191 - 359
Target Start/End: Complemental strand, 8677325 - 8677160
Alignment:
| Q |
191 |
tttgctgttaccgctctcgttggtatactctccaatgctaccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatgg |
290 |
Q |
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| T |
8677325 |
tttgctgttactgctcttgtcggtctcgtctcaaatgctaccggttattctgcttct---aagcatgttcctttgtgggagcttatttggttctctgctg |
8677229 |
T |
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| Q |
291 |
tcgccaatttgtctatcactgccatgaattttagcctaatgctaaactctgttggattctaccaagtat |
359 |
Q |
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| T |
8677228 |
ttgccaatatatctatcaccgggatgaacttgagcctcatgctcaattccgttggattctaccaagtat |
8677160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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