View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13316_high_4 (Length: 526)

Name: NF13316_high_4
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13316_high_4
NF13316_high_4
[»] chr3 (13 HSPs)
chr3 (420-507)||(6075343-6075430)
chr3 (9-100)||(7147910-7148001)
chr3 (9-100)||(5508258-5508349)
chr3 (233-263)||(3548270-3548300)
chr3 (233-263)||(12767048-12767078)
chr3 (63-101)||(17155792-17155830)
chr3 (233-263)||(25109977-25110007)
chr3 (233-263)||(29313898-29313928)
chr3 (233-263)||(30271656-30271686)
chr3 (233-263)||(36867785-36867815)
chr3 (233-263)||(49872864-49872894)
chr3 (233-263)||(51460644-51460674)
chr3 (233-262)||(43767771-43767800)
[»] chr6 (12 HSPs)
chr6 (33-133)||(22410425-22410525)
chr6 (48-102)||(22566284-22566338)
chr6 (233-263)||(1319264-1319294)
chr6 (233-263)||(7922426-7922456)
chr6 (233-263)||(9286348-9286378)
chr6 (233-263)||(25400654-25400684)
chr6 (233-263)||(30245979-30246009)
chr6 (233-263)||(33751818-33751848)
chr6 (233-263)||(34715794-34715824)
chr6 (233-262)||(24325625-24325654)
chr6 (9-101)||(8241198-8241290)
chr6 (33-101)||(17883897-17883965)
[»] chr7 (28 HSPs)
chr7 (9-133)||(16365594-16365718)
chr7 (9-132)||(9731713-9731835)
chr7 (9-126)||(6042357-6042474)
chr7 (40-133)||(8313510-8313602)
chr7 (49-133)||(5108455-5108539)
chr7 (9-102)||(1587601-1587694)
chr7 (33-133)||(2563706-2563807)
chr7 (33-101)||(17151859-17151927)
chr7 (63-131)||(4986447-4986514)
chr7 (63-131)||(4990545-4990612)
chr7 (32-101)||(1848333-1848402)
chr7 (233-263)||(4103846-4103876)
chr7 (233-263)||(19272330-19272360)
chr7 (233-263)||(20041013-20041043)
chr7 (233-263)||(23371596-23371626)
chr7 (233-263)||(26930781-26930811)
chr7 (233-263)||(31186781-31186811)
chr7 (233-263)||(43251621-43251651)
chr7 (233-262)||(3307557-3307586)
chr7 (233-262)||(9915790-9915819)
chr7 (233-262)||(9923702-9923731)
chr7 (233-262)||(23314872-23314901)
chr7 (233-262)||(25077704-25077733)
chr7 (372-404)||(5909716-5909748)
chr7 (235-263)||(14078919-14078947)
chr7 (235-263)||(14388947-14388975)
chr7 (372-404)||(24555923-24555955)
chr7 (372-408)||(39065382-39065418)
[»] chr4 (21 HSPs)
chr4 (33-131)||(11935083-11935180)
chr4 (9-126)||(12318329-12318446)
chr4 (9-132)||(15164654-15164780)
chr4 (9-123)||(13128960-13129074)
chr4 (32-102)||(17216737-17216807)
chr4 (233-263)||(2921662-2921692)
chr4 (233-263)||(21246626-21246656)
chr4 (233-263)||(21780271-21780301)
chr4 (233-263)||(21798482-21798512)
chr4 (233-263)||(22273041-22273071)
chr4 (233-263)||(27579659-27579689)
chr4 (233-263)||(43751157-43751187)
chr4 (233-263)||(56467525-56467555)
chr4 (233-262)||(38655971-38656000)
chr4 (233-262)||(45900701-45900730)
chr4 (233-262)||(51396268-51396297)
chr4 (235-263)||(18437250-18437278)
chr4 (372-404)||(22272933-22272965)
chr4 (274-302)||(29431563-29431591)
chr4 (372-404)||(50727593-50727625)
chr4 (372-404)||(50735607-50735639)
[»] scaffold0024 (1 HSPs)
scaffold0024 (13-133)||(39473-39593)
[»] chr8 (17 HSPs)
chr8 (33-131)||(13315101-13315200)
chr8 (9-100)||(19786653-19786744)
chr8 (33-100)||(24110765-24110832)
chr8 (372-407)||(29726106-29726141)
chr8 (233-295)||(38500396-38500458)
chr8 (56-107)||(16403782-16403833)
chr8 (233-263)||(960414-960444)
chr8 (233-263)||(14329515-14329545)
chr8 (233-263)||(25277586-25277616)
chr8 (233-263)||(27198257-27198287)
chr8 (233-263)||(27987407-27987437)
chr8 (233-263)||(28044709-28044739)
chr8 (63-104)||(14656852-14656893)
chr8 (233-262)||(17812063-17812092)
chr8 (233-262)||(41565385-41565414)
chr8 (233-262)||(43945278-43945307)
chr8 (372-404)||(29309796-29309828)
[»] chr5 (20 HSPs)
chr5 (3-132)||(25402417-25402545)
chr5 (9-100)||(24267040-24267131)
chr5 (9-100)||(24343671-24343762)
chr5 (233-263)||(5718375-5718405)
chr5 (63-132)||(15373483-15373555)
chr5 (233-263)||(20688907-20688937)
chr5 (233-263)||(20698436-20698466)
chr5 (233-263)||(21148911-21148941)
chr5 (233-263)||(22642265-22642295)
chr5 (33-99)||(23265085-23265151)
chr5 (233-263)||(24098543-24098573)
chr5 (233-263)||(31861603-31861633)
chr5 (233-263)||(33052964-33052994)
chr5 (233-263)||(39418830-39418860)
chr5 (233-262)||(711351-711380)
chr5 (233-262)||(12399500-12399529)
chr5 (63-131)||(17431771-17431842)
chr5 (233-262)||(29754160-29754189)
chr5 (234-263)||(35798598-35798627)
chr5 (33-102)||(39434377-39434446)
[»] chr2 (17 HSPs)
chr2 (2-132)||(31804979-31805110)
chr2 (9-100)||(8503156-8503248)
chr2 (51-132)||(28925422-28925505)
chr2 (420-508)||(29987688-29987774)
chr2 (233-263)||(3364476-3364506)
chr2 (233-263)||(17328204-17328234)
chr2 (233-263)||(18665823-18665853)
chr2 (233-263)||(19493394-19493424)
chr2 (233-263)||(20182371-20182401)
chr2 (233-263)||(25227973-25228003)
chr2 (233-263)||(27010076-27010106)
chr2 (233-263)||(28149582-28149612)
chr2 (233-263)||(32449836-32449866)
chr2 (233-263)||(43302029-43302059)
chr2 (233-262)||(25926995-25927024)
chr2 (372-408)||(6468286-6468322)
chr2 (372-404)||(28149688-28149720)
[»] scaffold0056 (1 HSPs)
scaffold0056 (32-102)||(24905-24975)
[»] chr1 (10 HSPs)
chr1 (33-107)||(18830383-18830457)
chr1 (233-263)||(5348248-5348278)
chr1 (233-263)||(13509305-13509335)
chr1 (233-263)||(42847662-42847692)
chr1 (233-263)||(51904127-51904157)
chr1 (233-262)||(7112606-7112635)
chr1 (233-262)||(13545726-13545755)
chr1 (233-262)||(28724445-28724474)
chr1 (372-408)||(2059448-2059484)
chr1 (372-404)||(5330423-5330455)
[»] scaffold0010 (1 HSPs)
scaffold0010 (233-302)||(26418-26487)
[»] scaffold0427 (1 HSPs)
scaffold0427 (9-131)||(2893-3015)
[»] scaffold0740 (1 HSPs)
scaffold0740 (233-263)||(3758-3788)
[»] scaffold0113 (1 HSPs)
scaffold0113 (233-263)||(28799-28829)
[»] scaffold0092 (1 HSPs)
scaffold0092 (233-263)||(44469-44499)
[»] scaffold0031 (1 HSPs)
scaffold0031 (233-263)||(1936-1966)
[»] scaffold0021 (1 HSPs)
scaffold0021 (233-263)||(158183-158213)
[»] scaffold0727 (1 HSPs)
scaffold0727 (233-262)||(943-972)
[»] scaffold1554 (1 HSPs)
scaffold1554 (372-404)||(355-387)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 420 - 507
Target Start/End: Complemental strand, 6075430 - 6075343
Alignment:
Q  420 ataattaaaatagtatatgaacatgttacacttgtatatgtatgtatgtgaatatgttcaagtgtttaaaccttattcgaacaaactt 507  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  6075430 ataattaaaagagtatatgaacaggttacacttgtatatgtatgtatgtgaatatgttcaagtgtttagaccttattcgatcaaactt 6075343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 7148001 - 7147910
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatt 100  Q
    ||||||||| ||| |||||  | |||||| |||||||| ||||||| | |||| |||| |||||||||| ||||| ||| ||||||||||||    
T  7148001 tttggtacatttgcctaatccgaccatcaagtttttggcgccgttgttagggattgtttatattttcgattaagcaatttaaattacttatt 7147910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 5508349 - 5508258
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatt 100  Q
    ||||||||||||| |||||  | ||||||  ||||||| ||||||||  | || ||||||||||||  | ||||| ||||||||||||||||    
T  5508349 tttggtacacttgcctaattcgaccatcaaatttttggcgccgttgccagagattgttgatattttgaattaagcaattcaaattacttatt 5508258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 3548300 - 3548270
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  3548300 taataggccaaacaaaaacgaaaatttcttg 3548270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 12767048 - 12767078
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  12767048 taataggccaaacaaaaacgaaaatttcttg 12767078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 17155830 - 17155792
Alignment:
Q  63 tgttgatattttcgactaagcgattcaaattacttattt 101  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  17155830 tgttgatattttcaactaagcgattcaaattatttattt 17155792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 25110007 - 25109977
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  25110007 taataggccaaacaaaaacgaaaatttcttg 25109977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 29313898 - 29313928
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  29313898 taataggccaaacaaaaacgaaaatttcttg 29313928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 30271656 - 30271686
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  30271656 taataggccaaacaaaaacgaaaatttcttg 30271686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 36867815 - 36867785
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  36867815 taataggccaaacaaaaacgaaaatttcttg 36867785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 49872894 - 49872864
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  49872894 taataggccaaacaaaaacgaaaatttcttg 49872864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 51460644 - 51460674
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  51460644 taataggccaaacaaaaacgaaaatttcttg 51460674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 43767771 - 43767800
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  43767771 taataggccaaacaaaaacgaaaatttctt 43767800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 22410425 - 22410525
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatcattatgtttctgtcatttatttttc 132  Q
    ||||| |||||||| | ||||||  |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  22410425 catcaagtttttggtgtcgttgccagggattgttgatatcttcgactaagcgattcaaattacttattttctatctttatttttctgtcatttatttttc 22410524  T
Q  133 a 133  Q
    |    
T  22410525 a 22410525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 22566284 - 22566338
Alignment:
Q  48 gccgttgctggggactgttgatattttcgactaagcgattcaaattacttatttt 102  Q
    ||||| |||||||| ||||||||||||  ||||||| ||||||||||||||||||    
T  22566284 gccgtagctggggattgttgatattttttactaagcaattcaaattacttatttt 22566338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 1319294 - 1319264
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  1319294 taataggccaaacaaaaacgaaaatttcttg 1319264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 7922426 - 7922456
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  7922426 taataggccaaacaaaaacgaaaatttcttg 7922456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 9286378 - 9286348
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  9286378 taataggccaaacaaaaacgaaaatttcttg 9286348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 25400654 - 25400684
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  25400654 taataggccaaacaaaaacgaaaatttcttg 25400684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 30246009 - 30245979
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  30246009 taataggccaaacaaaaacgaaaatttcttg 30245979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 33751818 - 33751848
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  33751818 taataggccaaacaaaaacgaaaatttcttg 33751848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 34715794 - 34715824
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  34715794 taataggccaaacaaaaacgaaaatttcttg 34715824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 24325625 - 24325654
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  24325625 taataggccaaacaaaaacgaaaatttctt 24325654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 8241290 - 8241198
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattt 101  Q
    ||||||||||||| |||||  | | |||| |||||| | | |||||  ||||| ||||||||||| | ||||||||||||||||  |||||||    
T  8241290 tttggtacacttgcctaatccgactatcaagttttttgcgtcgttgtcggggattgttgatatttccaactaagcgattcaaatcgcttattt 8241198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 17883897 - 17883965
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattt 101  Q
    ||||| |||||||  ||| ||||||| || | || |||||||| |||||||||||| ||||||||||||    
T  17883897 catcaagtttttgtcgccattgctggagattttttatattttcaactaagcgattctaattacttattt 17883965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 16365718 - 16365594
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatca 108  Q
    |||||||||||| ||||||  | | |||| |||||| | ||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||     
T  16365718 tttggtacacttttctaatccgactatcaagtttttagcgccgttgctggagattgttgatattttcgactaagcaatttaaattacttattttctatct 16365619  T
Q  109 ttatgtttctgtcatttatttttca 133  Q
    |||| | ||||||||||| ||||||    
T  16365618 ttatttgtctgtcatttaattttca 16365594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 9731713 - 9731835
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatca 108  Q
    ||||||||||||| |||||  |  ||||| |||||||| || |||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||     
T  9731713 tttggtacacttgcctaatccgcacatcaagtttttggcgctgttg-tcgggattgttgatattttcgactaagcgattgaaattacttattttctatct 9731811  T
Q  109 ttatgtttctgtcatttatttttc 132  Q
    |||| ||||||||||| |||||||    
T  9731812 ttatttttctgtcattcatttttc 9731835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 6042474 - 6042357
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatca 108  Q
    |||| ||||||||||||||  |  ||||| |||||||| ||||||||  | || ||||||||||||||||||||||| |||||||||||||||||||||     
T  6042474 tttgatacacttgtctaatccgcacatcaagtttttggcgccgttgcccgagattgttgatattttcgactaagcgaatcaaattacttattttctatct 6042375  T
Q  109 ttatgtttctgtcattta 126  Q
    |||| ||| |||||||||    
T  6042374 ttatttttttgtcattta 6042357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 8313510 - 8313602
Alignment:
Q  40 tttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatcattatgtttctgtcatttatttttca 133  Q
    ||||||| |||||||||||||| |||||||||||||||||||   |||||||||||||| |||||| | |||  ||||| ||||||||||||||    
T  8313510 tttttggcgccgttgctggggattgttgatattttcgactaaataattcaaattactta-tttctaactttacttttctttcatttatttttca 8313602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 5108539 - 5108455
Alignment:
Q  49 ccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatcattatgtttctgtcatttatttttca 133  Q
    ||||||| || || |||| | |||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||| ||||||||    
T  5108539 ccgttgccggagattgttaacattttcgactaagcaattaaaattacttattttctatctttatttttctgtcattgatttttca 5108455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 1587694 - 1587601
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatttt 102  Q
    ||||||||| ||| |||||  | |||||| |||||||| |||||||| || || ||||||| ||||||||||||| ||||||| ||||||||||    
T  1587694 tttggtacatttgcctaatccgaccatcaagtttttggtgccgttgccggagattgttgatgttttcgactaagcaattcaaagtacttatttt 1587601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 2563807 - 2563706
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattactta-ttttctatcattatgtttctgtcatttattttt 131  Q
    ||||| |||||||| |||||||  ||||| | |||||||||||||||||   ||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  2563807 catcaagtttttggcgccgttgtcggggattattgatattttcgactaaataatttaaattacttatttttctatctttattattctgtcatttattttt 2563708  T
Q  132 ca 133  Q
    ||    
T  2563707 ca 2563706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 17151859 - 17151927
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattt 101  Q
    ||||| |||||||| |||||||| ||||  |||||||||||| |||||||| |||||||||||||||||    
T  17151859 catcaagtttttggcgccgttgccgggggttgttgatatttttgactaagcaattcaaattacttattt 17151927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 4986514 - 4986447
Alignment:
Q  63 tgttgatattttcgactaagcgattcaaattacttattttctatcattatgtttctgtcatttattttt 131  Q
    |||| |||||||||||||||| |||||||||||||| |||| ||| |||  ||||||||||||||||||    
T  4986514 tgttaatattttcgactaagcaattcaaattactta-tttcaatctttacttttctgtcatttattttt 4986447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 4990612 - 4990545
Alignment:
Q  63 tgttgatattttcgactaagcgattcaaattacttattttctatcattatgtttctgtcatttattttt 131  Q
    |||| |||||||||||||||| |||||||||||||| |||| ||| |||  ||||||||||||||||||    
T  4990612 tgttaatattttcgactaagcaattcaaattactta-tttcaatctttacttttctgtcatttattttt 4990545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 1848333 - 1848402
Alignment:
Q  32 ccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattt 101  Q
    |||||| |||||||| |||||||  | ||| |||||||||||||| |||||| ||| |||||||||||||    
T  1848333 ccatcaagtttttggcgccgttgtcgaggattgttgatattttcggctaagcaatttaaattacttattt 1848402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 4103846 - 4103876
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  4103846 taataggccaaacaaaaacgaaaatttcttg 4103876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 19272330 - 19272360
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  19272330 taataggccaaacaaaaacgaaaatttcttg 19272360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 20041013 - 20041043
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  20041013 taataggccaaacaaaaacgaaaatttcttg 20041043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 23371626 - 23371596
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  23371626 taataggccaaacaaaaacgaaaatttcttg 23371596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 26930811 - 26930781
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  26930811 taataggccaaacaaaaacgaaaatttcttg 26930781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 31186781 - 31186811
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  31186781 taataggccaaacaaaaacgaaaatttcttg 31186811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 43251621 - 43251651
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  43251621 taataggccaaacaaaaacgaaaatttcttg 43251651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 3307557 - 3307586
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  3307557 taataggccaaacaaaaacgaaaatttctt 3307586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 9915819 - 9915790
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  9915819 taataggccaaacaaaaacgaaaatttctt 9915790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 9923731 - 9923702
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  9923731 taataggccaaacaaaaacgaaaatttctt 9923702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 23314901 - 23314872
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  23314901 taataggccaaacaaaaacgaaaatttctt 23314872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 25077733 - 25077704
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  25077733 taataggccaaacaaaaacgaaaatttctt 25077704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 5909748 - 5909716
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    ||||||||||||||||||||||| |||||||||    
T  5909748 tgacctatattacatggggtaaagacctattaa 5909716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 14078947 - 14078919
Alignment:
Q  235 ataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||    
T  14078947 ataggccaaacaaaaacgaaaatttcttg 14078919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 14388975 - 14388947
Alignment:
Q  235 ataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||    
T  14388975 ataggccaaacaaaaacgaaaatttcttg 14388947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 24555923 - 24555955
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    |||||||||||||| ||||||||||||||||||    
T  24555923 tgacctatattacagggggtaaaaacctattaa 24555955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 39065418 - 39065382
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaatcct 408  Q
    |||||||||||||| |||||||| |||||||||||||    
T  39065418 tgacctatattacagggggtaaagacctattaatcct 39065382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 11935180 - 11935083
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatcattatgtttctgtcatttattttt 131  Q
    ||||| |||||| | ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||    
T  11935180 catcaagtttttagcgccgttg-tcgggattgttgatattttcgactaagcgattcaaattacttattttctatctttatttttcagtcatttattttt 11935083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 12318446 - 12318329
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatca 108  Q
    ||||||||||||| |||||  | |||| | |||||||| |||||| ||||||| | | ||||||||||||||| | ||| |||||||||||||||||||     
T  12318446 tttggtacacttgcctaatccgaccatgaagtttttggtgccgtttctggggattatcgatattttcgactaaacaatttaaattacttattttctatct 12318347  T
Q  109 ttatgtttctgtcattta 126  Q
    |||| |||||||||||||    
T  12318346 ttatttttctgtcattta 12318329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 15164780 - 15164654
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattt---tcta 105  Q
    |||||||||||||||  ||  | |||||| |||||| | || ||||| ||||| ||||||||||||||||||||| ||| |||||  ||||||   ||||    
T  15164780 tttggtacacttgtcatatccgaccatcaagtttttagcgctgttgccggggattgttgatattttcgactaagcaatttaaattttttatttttatcta 15164681  T
Q  106 tcattatgtttctgtcatttatttttc 132  Q
    || |||| |||||||||||||||||||    
T  15164680 tctttatttttctgtcatttatttttc 15164654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 13128960 - 13129074
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatca 108  Q
    ||||||||||||| |||||  |  ||||| |||||| | |||||||  ||||| ||| ||||| || ||||||||||||||||||||||||||| |||||    
T  13128960 tttggtacacttgcctaattcgaacatcaagtttttagcgccgttgtcggggattgtggatatatttgactaagcgattcaaattacttatttt-tatca 13129058  T
Q  109 -ttatgtttctgtcat 123  Q
     |||| ||||||||||    
T  13129059 tttatttttctgtcat 13129074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 17216807 - 17216737
Alignment:
Q  32 ccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatttt 102  Q
    |||||| |||||| | | |||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  17216807 ccatcaagtttttagcgtcgttgccggggaatgttgatattttcgactaagcaatttaaattacttatttt 17216737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 2921662 - 2921692
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  2921662 taataggccaaacaaaaacgaaaatttcttg 2921692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 21246656 - 21246626
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  21246656 taataggccaaacaaaaacgaaaatttcttg 21246626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 21780301 - 21780271
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  21780301 taataggccaaacaaaaacgaaaatttcttg 21780271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 21798512 - 21798482
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  21798512 taataggccaaacaaaaacgaaaatttcttg 21798482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 22273041 - 22273071
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  22273041 taataggccaaacaaaaacgaaaatttcttg 22273071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 27579689 - 27579659
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  27579689 taataggccaaacaaaaacgaaaatttcttg 27579659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 43751157 - 43751187
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  43751157 taataggccaaacaaaaacgaaaatttcttg 43751187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 56467525 - 56467555
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  56467525 taataggccaaacaaaaacgaaaatttcttg 56467555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 38656000 - 38655971
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  38656000 taataggccaaacaaaaacgaaaatttctt 38655971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 45900730 - 45900701
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  45900730 taataggccaaacaaaaacgaaaatttctt 45900701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 51396268 - 51396297
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  51396268 taataggccaaacaaaaacgaaaatttctt 51396297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 18437278 - 18437250
Alignment:
Q  235 ataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||    
T  18437278 ataggccaaacaaaaacgaaaatttcttg 18437250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 22272965 - 22272933
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    |||||||||||||| ||||||||||||||||||    
T  22272965 tgacctatattacagggggtaaaaacctattaa 22272933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 29431563 - 29431591
Alignment:
Q  274 ttggtttttgtttggcctattagtggggt 302  Q
    |||||||||||||||||||||||||||||    
T  29431563 ttggtttttgtttggcctattagtggggt 29431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 50727625 - 50727593
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    |||||||||||||| ||||||||||||||||||    
T  50727625 tgacctatattacagggggtaaaaacctattaa 50727593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 50735639 - 50735607
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    |||||||||||||| ||||||||||||||||||    
T  50735639 tgacctatattacagggggtaaaaacctattaa 50735607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 39593 - 39473
Alignment:
Q  13 gtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatc-atta 111  Q
    ||||||||| |||||  | |||||| |||||||| | || ||||||||| ||||||||||| | ||||||| |||||||||||||| ||||||||  |||    
T  39593 gtacacttgcctaatccggccatcaagtttttggtgtcgatgctggggattgttgatatttccaactaagcaattcaaattactta-tttctatctttta 39495  T
Q  112 tgtttctgtcatttatttttca 133  Q
    | ||||||||||||||||||||    
T  39494 tttttctgtcatttatttttca 39473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 13315101 - 13315200
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattactta-ttttctatcattatgtttctgtcatttattttt 131  Q
    ||||| |||||||| || ||| | ||||| ||||||||||||||||||||| ||| |||||||||| ||||| ||| |||| ||||||||||||||||||    
T  13315101 catcaagtttttggcgctgtttccggggattgttgatattttcgactaagcaatttaaattacttatttttccatctttatttttctgtcatttattttt 13315200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 19786744 - 19786653
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatt 100  Q
    ||||||| |||||||||||  | ||||||  ||||||| | |||||| | ||| ||||||||||||| |||||||  |||||||||||||||    
T  19786744 tttggtatacttgtctaatccgaccatcaaatttttggcgtcgttgccgaggaatgttgatattttcaactaagcagttcaaattacttatt 19786653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 24110765 - 24110832
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatt 100  Q
    ||||| |||||||| |||||||  ||||| ||||||||||||||||||| | ||| ||||||||||||    
T  24110765 catcaagtttttggcgccgttgtcggggattgttgatattttcgactaaacaatttaaattacttatt 24110832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 29726141 - 29726106
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaatcc 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  29726141 tgacctatattacatggggtaaaaacctattaatcc 29726106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 38500458 - 38500396
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttgnnnnnnnnnnttggtttttgtttggcctatta 295  Q
    |||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  38500458 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaaattggtttttgtttggcctatta 38500396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 16403833 - 16403782
Alignment:
Q  56 tggggactgttgatattttcgactaagcgattcaaattacttattttctatc 107  Q
    |||||| ||||||| |||| |||| | |||||||||||||||||||||||||    
T  16403833 tggggattgttgatttttttgactgaacgattcaaattacttattttctatc 16403782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 960444 - 960414
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  960444 taataggccaaacaaaaacgaaaatttcttg 960414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 14329545 - 14329515
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  14329545 taataggccaaacaaaaacgaaaatttcttg 14329515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 25277586 - 25277616
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  25277586 taataggccaaacaaaaacgaaaatttcttg 25277616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 27198257 - 27198287
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  27198257 taataggccaaacaaaaacgaaaatttcttg 27198287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 27987407 - 27987437
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  27987407 taataggccaaacaaaaacgaaaatttcttg 27987437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 28044709 - 28044739
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  28044709 taataggccaaacaaaaacgaaaatttcttg 28044739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 14656893 - 14656852
Alignment:
Q  63 tgttgatattttcgactaagcgattcaaattacttattttct 104  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  14656893 tgttgatattttcgactgagcaatttaaattacttattttct 14656852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 17812063 - 17812092
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  17812063 taataggccaaacaaaaacgaaaatttctt 17812092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 41565385 - 41565414
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  41565385 taataggccaaacaaaaacgaaaatttctt 41565414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 43945278 - 43945307
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  43945278 taataggccaaacaaaaacgaaaatttctt 43945307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 29309796 - 29309828
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    |||||||||||||| ||||||||||||||||||    
T  29309796 tgacctatattacagggggtaaaaacctattaa 29309828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 25402417 - 25402545
Alignment:
Q  3 aaacattttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatttt 102  Q
    ||||| ||||||||||||| ||||| ||  ||||| |||||||| |||  |||  | || | ||||||||||| ||||||||||||||||||||||  ||    
T  25402417 aaacaatttggtacacttgcctaatttgcacatcaagtttttggcgccactgcccgagattattgatattttcaactaagcgattcaaattactta-gtt 25402515  T
Q  103 ctatcattatgtttctgtcatttatttttc 132  Q
    ||||| |||| |||| |||| |||||||||    
T  25402516 ctatctttatttttcagtcagttatttttc 25402545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 24267040 - 24267131
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatt 100  Q
    ||||||||||||| |||||  | |||||| ||||||||  | ||||| | ||| ||||||||||||||||||||| ||||||||||| ||||    
T  24267040 tttggtacacttgcctaattcgaccatcaagtttttggcactgttgccgaggattgttgatattttcgactaagcaattcaaattacatatt 24267131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 24343671 - 24343762
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatt 100  Q
    ||||||||||||| |||||  | |||||| ||||||||  | ||||| | ||| ||||||||||||||||||||| ||||||||||| ||||    
T  24343671 tttggtacacttgcctaattcgaccatcaagtttttggcactgttgccgaggattgttgatattttcgactaagcaattcaaattacatatt 24343762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 5718405 - 5718375
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  5718405 taataggccaaacaaaaacgaaaatttcttg 5718375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 15373483 - 15373555
Alignment:
Q  63 tgttgatattttcgactaagcgattcaaattacttattt---tctatcattatgtttctgtcatttatttttc 132  Q
    ||||||||||||| ||||| | ||| |||||||||||||   | |||| |||| |||||||||||||||||||    
T  15373483 tgttgatattttctactaaacaatttaaattacttatttttatttatctttatttttctgtcatttatttttc 15373555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 20688907 - 20688937
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  20688907 taataggccaaacaaaaacgaaaatttcttg 20688937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 20698466 - 20698436
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  20698466 taataggccaaacaaaaacgaaaatttcttg 20698436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 21148911 - 21148941
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  21148911 taataggccaaacaaaaacgaaaatttcttg 21148941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 22642295 - 22642265
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  22642295 taataggccaaacaaaaacgaaaatttcttg 22642265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 23265151 - 23265085
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttat 99  Q
    ||||| ||||||||  |||||| ||| || ||||||||||||||||||||| ||| |||| ||||||    
T  23265151 catcaagtttttggcaccgttgttggagattgttgatattttcgactaagcaatttaaatgacttat 23265085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 24098543 - 24098573
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  24098543 taataggccaaacaaaaacgaaaatttcttg 24098573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 31861603 - 31861633
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  31861603 taataggccaaacaaaaacgaaaatttcttg 31861633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 33052994 - 33052964
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  33052994 taataggccaaacaaaaacgaaaatttcttg 33052964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 39418830 - 39418860
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  39418830 taataggccaaacaaaaacgaaaatttcttg 39418860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 711351 - 711380
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  711351 taataggccaaacaaaaacgaaaatttctt 711380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 12399529 - 12399500
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  12399529 taataggccaaacaaaaacgaaaatttctt 12399500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 17431842 - 17431771
Alignment:
Q  63 tgttgatattttcgactaagcgattcaaattacttattt---tctatcattatgtttctgtcatttattttt 131  Q
    ||||||||||||||| ||| | ||| |||||||||||||   | |||| |||| ||||||||||||||||||    
T  17431842 tgttgatattttcgattaaacaatttaaattacttatttttatttatctttatttttctgtcatttattttt 17431771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 29754160 - 29754189
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  29754160 taataggccaaacaaaaacgaaaatttctt 29754189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 263
Target Start/End: Complemental strand, 35798627 - 35798598
Alignment:
Q  234 aataggccaaacaaaaacgaaaatttcttg 263  Q
    ||||||||||||||||||||||||||||||    
T  35798627 aataggccaaacaaaaacgaaaatttcttg 35798598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 39434446 - 39434377
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatttt 102  Q
    ||||| |||||||| |||||||| ||| | |||||||||||| || ||| | ||| ||||||||||||||    
T  39434446 catcaagtttttggcgccgttgccgggtattgttgatatttttgaataaacaatttaaattacttatttt 39434377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 31804979 - 31805110
Alignment:
Q  2 taaacattttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattt 101  Q
    |||||| ||||||||||||  |||||  |  ||||| |||||||| | |||||| || || ||||||||||||||| ||||| ||| |||| ||||||||    
T  31804979 taaacaatttggtacactttcctaattcgcacatcaagtttttggcgtcgttgccggagattgttgatattttcgattaagcaatttaaat-acttattt 31805077  T
Q  102 t--ctatcattatgtttctgtcatttatttttc 132  Q
    |  ||||| |||| |||||||||||||||||||    
T  31805078 tttctatctttatttttctgtcatttatttttc 31805110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 8503156 - 8503248
Alignment:
Q  9 tttggtacacttgtctaa-tatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatt 100  Q
    ||||||||||||| |||| || | |||||| ||||| || |||||||||||||| ||||||||||| ||||||||| |||  |||||||||||    
T  8503156 tttggtacacttgcctaaatacgaccatcatgttttgggcgccgttgctggggattgttgatatttccgactaagcaatttgaattacttatt 8503248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 28925505 - 28925422
Alignment:
Q  51 gttgctggggactgttgatattttcgactaagcgattcaaattactta--ttttctatcattatgtttctgtcatttatttttc 132  Q
    ||||| ||||| ||||||||||||||||||||| ||| |||||| |||  |||||||||  ||| |||||||||||||||||||    
T  28925505 gttgccggggattgttgatattttcgactaagcaatttaaattatttattttttctatctctatttttctgtcatttatttttc 28925422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 508
Target Start/End: Complemental strand, 29987774 - 29987688
Alignment:
Q  420 ataattaaaatagtatatgaacatgttacacttgtatatgtatgtatgtgaatatgttcaagtgtttaaaccttattcgaacaaacttg 508  Q
    ||||||| |||||||||||||||||||| |||||  | ||||||||||||||| || ||||||||   |||||| ||||||||| ||||    
T  29987774 ataattacaatagtatatgaacatgttagacttg--tttgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcgaacaatcttg 29987688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 3364506 - 3364476
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  3364506 taataggccaaacaaaaacgaaaatttcttg 3364476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 17328204 - 17328234
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  17328204 taataggccaaacaaaaacgaaaatttcttg 17328234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 18665853 - 18665823
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  18665853 taataggccaaacaaaaacgaaaatttcttg 18665823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 19493424 - 19493394
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  19493424 taataggccaaacaaaaacgaaaatttcttg 19493394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 20182371 - 20182401
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  20182371 taataggccaaacaaaaacgaaaatttcttg 20182401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 25228003 - 25227973
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  25228003 taataggccaaacaaaaacgaaaatttcttg 25227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 27010076 - 27010106
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  27010076 taataggccaaacaaaaacgaaaatttcttg 27010106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 28149612 - 28149582
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  28149612 taataggccaaacaaaaacgaaaatttcttg 28149582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 32449866 - 32449836
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  32449866 taataggccaaacaaaaacgaaaatttcttg 32449836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 43302059 - 43302029
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  43302059 taataggccaaacaaaaacgaaaatttcttg 43302029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 25926995 - 25927024
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  25926995 taataggccaaacaaaaacgaaaatttctt 25927024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 6468286 - 6468322
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaatcct 408  Q
    |||||||||||||||||| |||| |||||||||||||    
T  6468286 tgacctatattacatgggctaaagacctattaatcct 6468322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 28149688 - 28149720
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    |||||||||||||| ||||||||||||||||||    
T  28149688 tgacctatattacagggggtaaaaacctattaa 28149720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 24975 - 24905
Alignment:
Q  32 ccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttatttt 102  Q
    |||||| |||||||| |||||||| ||||| |||||||||||||||||| || ||| |||||| |||||||    
T  24975 ccatcatgtttttggcgccgttgccggggattgttgatattttcgactatgcaatttaaattaattatttt 24905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 18830457 - 18830383
Alignment:
Q  33 catcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatc 107  Q
    ||||| ||| |||||| |||||  || || ||||| ||||||||||||| |||||||||||||||||||||||||    
T  18830457 catcaagttcttggagtcgttgtcggagattgttgttattttcgactaaacgattcaaattacttattttctatc 18830383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 5348248 - 5348278
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  5348248 taataggccaaacaaaaacgaaaatttcttg 5348278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 13509335 - 13509305
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  13509335 taataggccaaacaaaaacgaaaatttcttg 13509305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 42847692 - 42847662
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  42847692 taataggccaaacaaaaacgaaaatttcttg 42847662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 51904157 - 51904127
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  51904157 taataggccaaacaaaaacgaaaatttcttg 51904127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 7112606 - 7112635
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  7112606 taataggccaaacaaaaacgaaaatttctt 7112635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 13545755 - 13545726
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  13545755 taataggccaaacaaaaacgaaaatttctt 13545726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 28724474 - 28724445
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  28724474 taataggccaaacaaaaacgaaaatttctt 28724445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 2059448 - 2059484
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaatcct 408  Q
    |||||||||||||| |||||||| |||||||||||||    
T  2059448 tgacctatattacagggggtaaagacctattaatcct 2059484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 5330455 - 5330423
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    ||||||||||||||| |||||||||||||||||    
T  5330455 tgacctatattacatagggtaaaaacctattaa 5330423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 26418 - 26487
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttgnnnnnnnnnnttggtttttgtttggcctattagtggggt 302  Q
    |||||||||||||||||||||||||||||||          ||||||||||||||||||||||| |||||    
T  26418 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaaattggtttttgtttggcctattaggggggt 26487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 2893 - 3015
Alignment:
Q  9 tttggtacacttgtctaatatgtccatcacgtttttggagccgttgctggggactgttgatattttcgactaagcgattcaaattacttattttctatc- 107  Q
    ||||||||||||| |||||  |  ||||| ||||||||  ||||| | || || ||||| |||||| |||||||  | |||||||||||| ||| ||||     
T  2893 tttggtacacttgcctaatccgatcatcaagtttttggcaccgttaccggagattgttgttatttttgactaagaaaatcaaattactta-tttatatct 2991  T
Q  108 attatgtttctgtcatttattttt 131  Q
    ||||| ||||||||||||||||||    
T  2992 attatttttctgtcatttattttt 3015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 3758 - 3788
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  3758 taataggccaaacaaaaacgaaaatttcttg 3788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 28829 - 28799
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  28829 taataggccaaacaaaaacgaaaatttcttg 28799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 44469 - 44499
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  44469 taataggccaaacaaaaacgaaaatttcttg 44499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 1936 - 1966
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  1936 taataggccaaacaaaaacgaaaatttcttg 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 158213 - 158183
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttcttg 263  Q
    |||||||||||||||||||||||||||||||    
T  158213 taataggccaaacaaaaacgaaaatttcttg 158183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 943 - 972
Alignment:
Q  233 taataggccaaacaaaaacgaaaatttctt 262  Q
    ||||||||||||||||||||||||||||||    
T  943 taataggccaaacaaaaacgaaaatttctt 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 355 - 387
Alignment:
Q  372 tgacctatattacatggggtaaaaacctattaa 404  Q
    ||||||||||||||||||||||| |||||||||    
T  355 tgacctatattacatggggtaaagacctattaa 387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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