View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_high_6 (Length: 413)
Name: NF13316_high_6
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 41080671 - 41080276
Alignment:
| Q |
1 |
ctactgcatcaaaaacagaagctgcattctgacgctgcagcattgtcccctgcagaatgcgaaacacgtcatgtccacatcgacatgagaaaaactctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41080671 |
ctactgcatcaaaaacagaagctgcattctgacgctgcagcattgtcccctgcagaatgcaaaacacgtcatgtccacatcgacatgagaaaaactctgt |
41080572 |
T |
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| Q |
101 |
tattgcatgacatcatgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatc |
200 |
Q |
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| T |
41080571 |
tattgcatgacttcatgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatc |
41080472 |
T |
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| Q |
201 |
tgagttattgtgacatagacaatttactcacagctttagatgttattgttgattcaagcattgtattttgtgatagtcaaagtggcacccaacttgcaaa |
300 |
Q |
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| T |
41080471 |
tgagttattgtgacatagacaa-ttactcacagctttagatgttattgttgattcaagcattgtattttgtgatagtcaaagtggcacccaacttgcaaa |
41080373 |
T |
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| Q |
301 |
taaccccacttgccaagaatgttccaaacatatcgacattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaat |
397 |
Q |
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| T |
41080372 |
taaccccacttgccaagaatgttccaaacatatcgacattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaat |
41080276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 116 - 397
Target Start/End: Complemental strand, 41091906 - 41091631
Alignment:
| Q |
116 |
tgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttattgtgaca |
215 |
Q |
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| T |
41091906 |
tgatagcttggaaaccgaagaagtaaactattgttgctcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagttactgtggct |
41091807 |
T |
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| Q |
216 |
tagacaatttactcacagcttta-gatgttattgttgattcaagcattgtattttgtgatagtcaaagtggcacccaacttgcaaataaccccacttgcc |
314 |
Q |
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|| || ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| |
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| T |
41091806 |
taaac-------tcaaagctttttgatgttattgttggttcaagcattgtattttgtgatagtcaaagtggcatccaacttgcaactaagcccatttgcc |
41091714 |
T |
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| Q |
315 |
aagaatgttccaaacatatcgacattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaat |
397 |
Q |
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| T |
41091713 |
aagaacgttacaaacatatcgacttcgattgtgattttatccgggaatatgtttgttctagtttcctcaaacttgttcacaat |
41091631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 41101970 - 41101860
Alignment:
| Q |
99 |
gttattgcatgacatcatgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcaca |
198 |
Q |
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||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||| |||||||| |
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| T |
41101970 |
gttattgcatgactccatgatatctttgaaatcctagaagcaagctactgatgctctcttttccacagaggctgaatacaaggccattgcaaccctcaca |
41101871 |
T |
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| Q |
199 |
tctgagttatt |
209 |
Q |
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||||||||||| |
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| T |
41101870 |
tctgagttatt |
41101860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 41103062 - 41102977
Alignment:
| Q |
9 |
tcaaaaacagaagctgcattctgacgctgcagcattgtcccctgcagaatgcgaaacacgtcatgtccacatcgacatgagaaaaa |
94 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||| |||| |||| |
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| T |
41103062 |
tcaaaaacagaagctgcattctgacagcgcagcagtgtcccctgcagaatgcaaaacacttcatgtccacatcgacctgaggaaaa |
41102977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 397
Target Start/End: Complemental strand, 41101822 - 41101733
Alignment:
| Q |
308 |
acttgccaagaatgttccaaacatatcgacattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaat |
397 |
Q |
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|||||||||||| |||||||||||||| || | ||||| ||||||||| |||||||||||||| ||||||||||| |||||| |||| |
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| T |
41101822 |
acttgccaagaacgttccaaacatatcaacttcaattgtgattttatcctggaatatgtttgttcttgtttcctcaaacttgttcacaat |
41101733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 41101862 - 41101817
Alignment:
| Q |
252 |
attcaagcattgtattttgtgatagtcaaagtggcacccaacttgc |
297 |
Q |
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| T |
41101862 |
attcaagcattgtattttgtgatagtcaaagtggcatccaacttgc |
41101817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1216442 - 1216376
Alignment:
| Q |
1 |
ctactgcatcaaaaacagaagctgcattctgacgctgcagcattgtcccctgcagaatgcgaaacac |
67 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||| | |||| | ||||||||||| ||||| |||||| |
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| T |
1216442 |
ctactgcgtcaaaaatagaagctccattctgacaccgcagtagtgtcccctgcaaaatgcaaaacac |
1216376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 4133392 - 4133532
Alignment:
| Q |
116 |
tgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttattgt---g |
212 |
Q |
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|||||| |||||||| |||||||||||| || ||||| ||| | |||||||||||||||| |||||| ||||| |||||||||||||||||| | |
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| T |
4133392 |
tgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtggcg |
4133491 |
T |
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| Q |
213 |
acatagacaatttactcacagctttagatgttattgttgatt |
254 |
Q |
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| T |
4133492 |
gcatagacaa-ttattcagagcttttgttgttattgttgatt |
4133532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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