View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_low_10 (Length: 358)
Name: NF13316_low_10
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_low_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 143 - 358
Target Start/End: Complemental strand, 34085714 - 34085499
Alignment:
| Q |
143 |
atgatgacatcgaccttttagattttaattttagacggcaacggtgcaatgtttatgtaactactatccacattccacgactctaccttcactatcacga |
242 |
Q |
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| T |
34085714 |
atgatgacatcgaccttttagattttaattttagacggcaacggtgcaatgtttatgtaactactatccacattccacgactctaccttcactatcacga |
34085615 |
T |
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| Q |
243 |
taaaaacttctaaccacaaaccttactactaccttcttcctctttctttcacattttaacctattctcaattagaaaacgaatcttaccaacaacatcat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085614 |
taaaaacttctaaccacaaaccttactactaccttcttcctctttctttcacattttaacctattctcaattagaaaacgaatcttaccaacaacatcat |
34085515 |
T |
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| Q |
343 |
catctatacctctcac |
358 |
Q |
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|||||||||||||||| |
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| T |
34085514 |
catctatacctctcac |
34085499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 34085848 - 34085748
Alignment:
| Q |
5 |
agagagagactattttcttttgtaagagttattgattgataacattgtttggattgtctctaagtcgatacgacttctggtttgagcttatgccctcttt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085848 |
agagagagactattttcttttgtaagagttattgat----aacattgtttggattgtctctaagtcgatacgacttctggtttgagcttatgccctcttt |
34085753 |
T |
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| Q |
105 |
ctata |
109 |
Q |
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||||| |
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| T |
34085752 |
ctata |
34085748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 1752801 - 1752837
Alignment:
| Q |
5 |
agagagagactattttcttttgtaagagttattgatt |
41 |
Q |
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|||||||||||||| |||||||||||| ||||||||| |
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| T |
1752801 |
agagagagactattctcttttgtaagatttattgatt |
1752837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43414257 - 43414221
Alignment:
| Q |
1 |
gtaaagagagagactattttcttttgtaagagttatt |
37 |
Q |
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| T |
43414257 |
gtaaagagagagactattttcttttgtaagagttatt |
43414221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2317077 - 2317036
Alignment:
| Q |
1 |
gtaaagagagagactatt-ttcttttgtaagagttattgatt |
41 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||| |
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| T |
2317077 |
gtaaagagagagactattcttctcttgtaagagttattgatt |
2317036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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