View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_low_2 (Length: 635)
Name: NF13316_low_2
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 309 - 541
Target Start/End: Original strand, 8014375 - 8014600
Alignment:
| Q |
309 |
gtttaacattttcttataatt-gaaatttaaaaactccaaacattttgtttatacatgggaccagatggaggagggtataagtataactatagtgtaaaa |
407 |
Q |
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| T |
8014375 |
gtttagcattttcttataatttgagattaaaaaactccaaacattttgtttatacatgggaccagatgg--gagg-tataa-----actatagtgtaaaa |
8014466 |
T |
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| Q |
408 |
ttcacccacgtttgaccagctcataacaaaacaggactcgaagggtgtgtgttcaatgccaaaaatcaagaagggtggattattttattttattctttga |
507 |
Q |
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| T |
8014467 |
ttcacccacgtttgaccagctcatgacaaaacaggacttgaagggtgtgtgttcaatgccaaaaatcaagaaaggtggattattttattttattttttga |
8014566 |
T |
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| Q |
508 |
caaagaagggtggattatttaatggggaagaaat |
541 |
Q |
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| T |
8014567 |
caaagaagaggggattatttaaaggggaagaaat |
8014600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 8014089 - 8014304
Alignment:
| Q |
23 |
aattctgacactcacgatccgacataagctatagttgacttgagaaacatttcttctatatttgannnnnnnctagttggactatcatttattaagcgat |
122 |
Q |
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| T |
8014089 |
aattctaacattcacgatccgacataagttgtagttgacttgagaaacatttcttctatatttgatttttt-ctagttggactattatttattaagcggt |
8014187 |
T |
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| Q |
123 |
aaagaagattcagctaaatctaatctagatgtttaccatgtttatattctttttcgaaaagnnnnnnnnnncataaaatattcgtaggtgttaacaagta |
222 |
Q |
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| T |
8014188 |
agaggagattcagctaaatctaatttagatgtttacaatgtttatatttttttttttgcaaaaaaaaaaaacataaaatattcgtaggtgttaacaagta |
8014287 |
T |
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| Q |
223 |
agtataataagtttcct |
239 |
Q |
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| T |
8014288 |
agtataataagtttcct |
8014304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 538 - 602
Target Start/End: Original strand, 8015704 - 8015769
Alignment:
| Q |
538 |
aaatccatgtaaacagaaatctaatgtttttct-aaggaaaatataatgttaattatctatttatt |
602 |
Q |
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| T |
8015704 |
aaattcatgtaaacggaaatctaatgttttttttaaggaaaatataatgttaattatctatttatt |
8015769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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