View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_low_20 (Length: 241)
Name: NF13316_low_20
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_low_20 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 164811 - 165020
Alignment:
| Q |
21 |
aaagcttgtatctattaatctaaaataaatcctcacaaaacaaatatctnnnnnnnnccaataacacaataatcttccaacaaataaatacgcgtttaag |
120 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164811 |
aaagcttctatctattaatctaaaataaatcctcacaaaacaaatatctaaaaaaa-ccaataacacaataatcttccaacaaataaatacgcgtttaag |
164909 |
T |
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| Q |
121 |
catatatataaataaccttccaaccctaatattttcttcactcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggctt |
220 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164910 |
cttatatataaataaccttccaaccctaatattttcttcactcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggctt |
165009 |
T |
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| Q |
221 |
cttctcactcg |
231 |
Q |
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||||||||||| |
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| T |
165010 |
cttctcactcg |
165020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 14248915 - 14248706
Alignment:
| Q |
21 |
aaagcttgtatctattaatctaaaataaatcctcacaaaacaaatatctnnnnnnnnccaataacacaataatcttccaacaaataaatacgcgtttaag |
120 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248915 |
aaagcttctatctattaatctaaaataaatcctcacaaaacaaatatctaaaaaaa-ccaataacacaataatcttccaacaaataaatacgcgtttaag |
14248817 |
T |
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| Q |
121 |
catatatataaataaccttccaaccctaatattttcttcactcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggctt |
220 |
Q |
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| T |
14248816 |
cttatatataaataaccttccaaccctaatattttcttcactcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggctt |
14248717 |
T |
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| Q |
221 |
cttctcactcg |
231 |
Q |
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||||||||||| |
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| T |
14248716 |
cttctcactcg |
14248706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 3871 - 3820
Alignment:
| Q |
173 |
tagttaaccctaatattcccattctcgttcatctttctactatggcttcttc |
224 |
Q |
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|||||||||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
3871 |
tagttaaccctaattttcctattctccttcatctttctactatggcttcttc |
3820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 37245478 - 37245432
Alignment:
| Q |
178 |
aaccctaatattcccattctcgttc---atctttctactatggcttc |
221 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
37245478 |
aaccctaatattcccattctccttcttcatctttctactatggcttc |
37245432 |
T |
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