View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_low_5 (Length: 497)
Name: NF13316_low_5
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 9835694 - 9835223
Alignment:
| Q |
10 |
acatcatcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctgtcaattgttaacaatccaagatatgt |
109 |
Q |
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| T |
9835694 |
acatcagcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctgtcaattgttaacaatccaagatatgt |
9835595 |
T |
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| Q |
110 |
aagttaattaactatagatgtaatgtaacattttatgactttatcatatgaattt-acttc---atacattagaatggnnnnnnnntct--gatcatgtt |
203 |
Q |
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| T |
9835594 |
aagttaattaactatagatgtaa-----cattttttaactttataatatgaattttacttcgtcatacattagaagggaaaagaaaaattggatcatgtt |
9835500 |
T |
|
| Q |
204 |
ttgtattacaaagcatagacacggacaccagacacaacactgacacataaaatttgatcatgtgtgtgagccattgacacgtgactcacacc-gaccaat |
302 |
Q |
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| T |
9835499 |
ttgtattacaaagcatagacacggacaccagacacaacactgatacgtaaaatctgatcatgtgtgtgagccatttacacgtgactctaacccgaccaat |
9835400 |
T |
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| Q |
303 |
gatttgaagtgtcagtgcttcatatttgtaaattagaagtacctgagtagtatcctgcacaccaacattggtgatcctgaaagaatggacagcccagtct |
402 |
Q |
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| T |
9835399 |
gatttgaagtgtcagtgcttcgtatttgtaatttagaagtacctgagtagtatcctgcacaccgacattggtgatcctgaaagaatggacagcccagtcc |
9835300 |
T |
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| Q |
403 |
aagtagtgagcttgttcagatttcctcaatggcaacccttctcttaaagcagcctcgtcaatttggataacagtaat |
479 |
Q |
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| T |
9835299 |
aagtagtcagcttgtccagatttcctcaatggcaacccttctctcaaagcagcctcatcaatttggataacagtaat |
9835223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 470
Target Start/End: Original strand, 33466847 - 33466975
Alignment:
| Q |
342 |
tacctgagtagtatcctgcacaccaacattggtgatcctgaaagaatggacagcccagtctaagtagtgagcttgttcagatttcctcaatggcaaccct |
441 |
Q |
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||||||||| | ||||| ||||| ||||||||||| ||||| || |||||||||||||| ||||||||||| || ||||| ||||||| ||| | || |
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| T |
33466847 |
tacctgagtggagtcctgaacaccgacattggtgattctgaaggagtggacagcccagtccaagtagtgagcgtgctcagacttcctcagtggtagtccc |
33466946 |
T |
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| Q |
442 |
tctcttaaagcagcctcgtcaatttggat |
470 |
Q |
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| T |
33466947 |
tctctcaaagcagcctcatcaatttggat |
33466975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 33466694 - 33466773
Alignment:
| Q |
10 |
acatcatcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctgtcaatt |
89 |
Q |
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| T |
33466694 |
acatcagcatccatattaatgatggaatgaatgatgtcgttgaagttggagtagcacatgtgagtgtggatctgtcaatt |
33466773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 35948268 - 35948202
Alignment:
| Q |
17 |
catccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctg |
83 |
Q |
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| T |
35948268 |
catccatatctatgattgagtgaatgatgtcattgaagtttgagtagcacatgtgagtgtgaatctg |
35948202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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