View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13316_low_7 (Length: 409)
Name: NF13316_low_7
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 3572289 - 3572672
Alignment:
| Q |
11 |
catcatcaacattgccaataaagatatttatttgtttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572289 |
catcatcaacattgccaataaagatatttatttgtttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcatt |
3572388 |
T |
|
| Q |
111 |
ggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3572389 |
ggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctgga |
3572488 |
T |
|
| Q |
211 |
agcccgtggtacggtccagaccgtgtcaagtacttgggcccattctccggtgaagccccatcctacctcaccggtgaatttcctggtgactacggttggg |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || ||||||||||| |||||||| || |||| |
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| T |
3572489 |
agcccatggtacggtccagaccgtgtcaagtacttgggtccattctctggtgaagctccatcttaccttactggtgaatttcccggtgactatggatggg |
3572588 |
T |
|
| Q |
311 |
acactgctggactttctgctgacccagagacatttgccaagaaccgtgaacttgaggtcatccacagtagatgggctatgttgg |
394 |
Q |
| |
|
|||||||||||||||||||||| || ||||| || | || ||||||||||| |||||||| |||||||| ||||||||||||| |
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|
| T |
3572589 |
acactgctggactttctgctgatccggagaccttctctaaaaaccgtgaactagaggtcattcacagtaggtgggctatgttgg |
3572672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 40 - 394
Target Start/End: Original strand, 3563623 - 3563977
Alignment:
| Q |
40 |
atttgtttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccct |
139 |
Q |
| |
|
||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |
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|
| T |
3563623 |
atttgtttacttagtaaggaataaaatactaaaatggcggcttcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttccccat |
3563722 |
T |
|
| Q |
140 |
ctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaa |
239 |
Q |
| |
|
| || | |||| ||| |||||||| | || ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
3563723 |
ccacccaagacattggggtgggaagagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaa |
3563822 |
T |
|
| Q |
240 |
gtacttgggcccattctccggtgaagccccatcctacctcaccggtgaatttcctggtgactacggttgggacactgctggactttctgctgacccagag |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563823 |
gtacttgggcccattctccggtgaagccccatcctacctcaccggtgaatttcctggtgactacggttgggacactgctggactttctgctgacccagag |
3563922 |
T |
|
| Q |
340 |
acatttgccaagaaccgtgaacttgaggtcatccacagtagatgggctatgttgg |
394 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3563923 |
acatttgccaaaaaccgtgaactcgaggtcatccacagtagatgggctatgttgg |
3563977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 45 - 394
Target Start/End: Original strand, 3569276 - 3569625
Alignment:
| Q |
45 |
tttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctact |
144 |
Q |
| |
|
|||||||||||| || ||||| | || |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| || ||| |
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|
| T |
3569276 |
tttacttagtaagcaaaaaaataccacaatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttccccatccact |
3569375 |
T |
|
| Q |
145 |
ccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtact |
244 |
Q |
| |
|
| |||| ||| |||||||| | || |||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||| |
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|
| T |
3569376 |
caagacattggggtgggaagagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtact |
3569475 |
T |
|
| Q |
245 |
tgggcccattctccggtgaagccccatcctacctcaccggtgaatttcctggtgactacggttgggacactgctggactttctgctgacccagagacatt |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3569476 |
tgggcccattctccggtgaagccccatcctacctcacaggtgaattccctggtgactacggttgggacactgctggactttctgctgacccagagacatt |
3569575 |
T |
|
| Q |
345 |
tgccaagaaccgtgaacttgaggtcatccacagtagatgggctatgttgg |
394 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3569576 |
tgccaagaaccgtgaactcgaggtcatccacagtagatgggctatgttgg |
3569625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 73 - 392
Target Start/End: Original strand, 3575635 - 3575954
Alignment:
| Q |
73 |
atggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattacca |
172 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| |
|
|
| T |
3575635 |
atggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcacca |
3575734 |
T |
|
| Q |
173 |
tgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggcccattctccggtgaagccccatc |
272 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||| |
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|
| T |
3575735 |
tgaggaaaacaaccaacaagaagaacgtcccttctggaagcccgtggtacggtccagatcgtgtcaaatacttgggtccattctctggtgaagctccatc |
3575834 |
T |
|
| Q |
273 |
ctacctcaccggtgaatttcctggtgactacggttgggacactgctggactttctgctgacccagagacatttgccaagaaccgtgaacttgaggtcatc |
372 |
Q |
| |
|
|| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3575835 |
ttatctcactggtgaatttcctggtgactatggttgggacactgctgggctttctgctgacccagagacatttgccaagaaccgtgaactcgaggtcatc |
3575934 |
T |
|
| Q |
373 |
cacagtagatgggctatgtt |
392 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3575935 |
cacagtagatgggctatgtt |
3575954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 62 - 394
Target Start/End: Complemental strand, 3585594 - 3585262
Alignment:
| Q |
62 |
aaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatggg |
161 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
3585594 |
aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggcaatcaagctttccccttcgactccagaccttgtgatggg |
3585495 |
T |
|
| Q |
162 |
aagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggcccattctccggt |
261 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
3585494 |
aagaatcaccatgaggaaaacaaccaccaagaagactgctccttctggaagccagtggtacggtccagaccgtgtcaagtacttgggtccattctctggt |
3585395 |
T |
|
| Q |
262 |
gaagccccatcctacctcaccggtgaatttcctggtgactacggttgggacactgctggactttctgctgacccagagacatttgccaagaaccgtgaac |
361 |
Q |
| |
|
||||| ||||| |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
3585394 |
gaagctccatcttacctcacgggagaatttcctggtgattatggttgggatactgctgggctttctgccgacccagagacatttgccaaaaaccgtgaac |
3585295 |
T |
|
| Q |
362 |
ttgaggtcatccacagtagatgggctatgttgg |
394 |
Q |
| |
|
| |||||||| || ||||||||||||||||||| |
|
|
| T |
3585294 |
tcgaggtcattcatagtagatgggctatgttgg |
3585262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 66 - 392
Target Start/End: Original strand, 13275581 - 13275903
Alignment:
| Q |
66 |
ttctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaaga |
165 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| | |||||||| || ||||| |
|
|
| T |
13275581 |
ttctacaatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaacttaacccctctacccaagaccttggtattggaagg |
13275680 |
T |
|
| Q |
166 |
attaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggcccattctccggtgaag |
265 |
Q |
| |
|
| ||||||| ||||||||||| ||||| ||| |||| |||| || ||||| ||||||||||||||||||||| |||||||||||| ||||| | |
|
|
| T |
13275681 |
gtcaccatgaa-aaaacaaccacaaagaaa---gtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattctttggtgagg |
13275776 |
T |
|
| Q |
266 |
ccccatcctacctcaccggtgaatttcctggtgactacggttgggacactgctggactttctgctgacccagagacatttgccaagaaccgtgaacttga |
365 |
Q |
| |
|
||||||| ||| | || |||||||| |||||||| || |||||| | |||||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
13275777 |
ccccatcttacttgactggtgaattccctggtgattatggttggaatactgctggactttctgctgatccagagacatttgcaaaaaaccgtgaacttga |
13275876 |
T |
|
| Q |
366 |
ggtcatccacagtagatgggctatgtt |
392 |
Q |
| |
|
||| |||||| ||||||||| ||||| |
|
|
| T |
13275877 |
ggttatccactctagatgggccatgtt |
13275903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 209 - 394
Target Start/End: Original strand, 38356807 - 38356992
Alignment:
| Q |
209 |
gaagcccgtggtacggtccagaccgtgtcaagtacttgggcccattctccggtgaagccccatcctacctcaccggtgaatttcctggtgactacggttg |
308 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| |||| || ||| | || || || || || ||||||||||| || |
|
|
| T |
38356807 |
gaagcccatggtacggcccagaccgtgttaagtacttaggcccattctctggtgagcccccgtcttacttgactggagagttcccaggtgactacggatg |
38356906 |
T |
|
| Q |
309 |
ggacactgctggactttctgctgacccagagacatttgccaagaaccgtgaacttgaggtcatccacagtagatgggctatgttgg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
38356907 |
ggacactgctggactttctgctgacccagagacattcgccaagaaccgtgaacttgaagtcatccatagtaggtgggctatgttgg |
38356992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 386
Target Start/End: Original strand, 42602621 - 42602781
Alignment:
| Q |
226 |
ccagaccgtgtcaagtacttgggcccattctccggtgaagccccatcctacctcaccggtgaatttcctggtgactacggttgggacactgctggacttt |
325 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | || ||||| ||| | || ||||||||||||||||| || || |||||||| |||||| | | |
|
|
| T |
42602621 |
ccagaccgtcccaagtacttgggtccattctctgaacaaattccatcatacttgactggtgaatttcctggtgattatggatgggacacagctggattat |
42602720 |
T |
|
| Q |
326 |
ctgctgacccagagacatttgccaagaaccgtgaacttgaggtcatccacagtagatgggc |
386 |
Q |
| |
|
| |||||||| || || ||||| | ||||||||| ||||| || || ||||| |||||||| |
|
|
| T |
42602721 |
cagctgaccctgaaacctttgcaaggaaccgtgagcttgaagtaattcacagcagatgggc |
42602781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 33993313 - 33993245
Alignment:
| Q |
286 |
gaatttcctggtgactacggttgggacactgctggactttctgctgacccagagacatttgccaagaac |
354 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| | |||||||| ||||| |||||||||||||| |
|
|
| T |
33993313 |
gaattccctggtgattatggatgggacactgctggtttatctgctgatccagaagcatttgccaagaac |
33993245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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