View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13316_low_9 (Length: 360)
Name: NF13316_low_9
Description: NF13316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13316_low_9 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 360
Target Start/End: Original strand, 232340 - 232680
Alignment:
| Q |
20 |
aacaatagttaggtacaaagttcatggtcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcagg |
119 |
Q |
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| T |
232340 |
aacaatagttaggtacaaagtccatgttcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcagg |
232439 |
T |
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| Q |
120 |
agtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtccacactatgtagcacctaatttgatgccattgttgatttctgcaaactagcg |
219 |
Q |
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| T |
232440 |
agtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtccacactatgtagcacctaatttgatgccattgttgatttatgcagactagcg |
232539 |
T |
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| Q |
220 |
acaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgca |
319 |
Q |
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| T |
232540 |
acaattgtggttatccatctgatctagaaatttttgttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgca |
232639 |
T |
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| Q |
320 |
attattctgtcaaaaggaccactgatgatgtccatctcatt |
360 |
Q |
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| T |
232640 |
attattctgtcaaaaggaccactaatgatgtcaaactcatt |
232680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 14585035 - 14584695
Alignment:
| Q |
20 |
aacaatagttaggtacaaagttcatggtcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcagg |
119 |
Q |
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| T |
14585035 |
aacaatagttaggtacaaagtccatgttcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcagg |
14584936 |
T |
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| Q |
120 |
agtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtccacactatgtagcacctaatttgatgccattgttgatttctgcaaactagcg |
219 |
Q |
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| T |
14584935 |
agtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtccacactatgtagcacctaatttgatgccattgttgatttatgcagactagcg |
14584836 |
T |
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| Q |
220 |
acaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgca |
319 |
Q |
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| T |
14584835 |
acaattgtggttatccatctgatctagaaatttttgttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgca |
14584736 |
T |
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| Q |
320 |
attattctgtcaaaaggaccactgatgatgtccatctcatt |
360 |
Q |
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| T |
14584735 |
attattctgtcaaaaggaccactaatgatgtcaaactcatt |
14584695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 49825356 - 49825263
Alignment:
| Q |
253 |
ttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactgatga |
347 |
Q |
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| T |
49825356 |
ttgttggaaaacaaatgctatttaaggttgaaattacggatgggaacttaatgcata-attggcgcaactatgctgtcaaaaggacatctgatga |
49825263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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