View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13317_low_1 (Length: 388)
Name: NF13317_low_1
Description: NF13317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13317_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 44615094 - 44614765
Alignment:
| Q |
1 |
gggtgaataattgtgctaataaataatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattacattattaaattgatagca |
100 |
Q |
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| T |
44615094 |
gggtgaataattgtgctaataaagaatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattacattattaaattgatagca |
44614995 |
T |
|
| Q |
101 |
gaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctca |
200 |
Q |
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| T |
44614994 |
gaagccataacaaaacacaatcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctca |
44614895 |
T |
|
| Q |
201 |
aacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcctttgctattcctacccataaccagaca |
300 |
Q |
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| T |
44614894 |
aaattgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctattcctacccataaccaaaca |
44614795 |
T |
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| Q |
301 |
gtcaagggtgtgaactccacactgctaacc |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44614794 |
gtcaagggtgtgaactccacactgctaacc |
44614765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 44793475 - 44793804
Alignment:
| Q |
1 |
gggtgaataattgtgctaataaataatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattacattattaaattgatagca |
100 |
Q |
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| T |
44793475 |
gggtgaataattgtgctaataaagaatatttaagtcactgatgactcttaaaattctttgttatgtttggaggatttattacattattaaattgatagca |
44793574 |
T |
|
| Q |
101 |
gaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctca |
200 |
Q |
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| T |
44793575 |
gaagccataacaaaacacaatcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctca |
44793674 |
T |
|
| Q |
201 |
aacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcctttgctattcctacccataaccagaca |
300 |
Q |
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|| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
44793675 |
aaattgaaattgaaagccaaacaaaacacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctattcctacccataaccaaaca |
44793774 |
T |
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| Q |
301 |
gtcaagggtgtgaactccacactgctaacc |
330 |
Q |
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| T |
44793775 |
gtcaagggtgtgaactccacactgctaacc |
44793804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 44789760 - 44789949
Alignment:
| Q |
141 |
aaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
240 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
44789760 |
aaaaatccatttattacattaatcactcgatagcagaagattttcatacaaaaactgtcaaacttgaaattgaaagccaaacaaaacacaatcaaacact |
44789859 |
T |
|
| Q |
241 |
aaagttttaacaaaaactgttatttattgatcctttgctattcctacccataaccagacagtcaagggtgtgaactccacactgctaacc |
330 |
Q |
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| T |
44789860 |
aaagttttaacaaaaactgtcatttattgatcctttgctattcctacccataaccaaacagtcaagggtgtgaactccacactgctaacc |
44789949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 44146980 - 44146823
Alignment:
| Q |
83 |
attattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
182 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| |||| ||| |||||||||| |
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| T |
44146980 |
attattaactcgataacagaagccataacaaaacacagtcaagcactaaaattttaacaaaactccatctattacattattaactcgatggcagaagatt |
44146881 |
T |
|
| Q |
183 |
tccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
240 |
Q |
| |
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|||||||||||||| |||| ||||||||| ||||| || |||||||||||||||||| |
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| T |
44146880 |
tccatacaaaaactgtcaaccttgaaattgaaagcagaaaaaaacacaatcaaacact |
44146823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 44783372 - 44783517
Alignment:
| Q |
95 |
atagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaa |
194 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
44783372 |
atagcagaagccataacaaaacctagtcacacactaaagttttaacagaagtccatttattacattattaactcgatagcagaagatttcaatacaaaaa |
44783471 |
T |
|
| Q |
195 |
ctctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
240 |
Q |
| |
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||||||||||||| |||| || |||||||||||||||||| |
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| T |
44783472 |
tcaccaaacttgaaattgaaagtagaaaaaaacacaatcaaacact |
44783517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 44789646 - 44789743
Alignment:
| Q |
57 |
tttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttatta |
156 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44789646 |
tttgttatgtttggaggatgtattacattattaaattga-agcagaagccataa--aagcacagtcacacactaaagttttaacaaaattccatttatta |
44789742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 174 - 330
Target Start/End: Original strand, 29505175 - 29505328
Alignment:
| Q |
174 |
cagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcc |
273 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||| ||| ||||||| |||| |
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| T |
29505175 |
cagaagatttccatacaaaaactgtcaaacttgaaattgaaagcctaacaaa-cacaataaaacactaaagtcttaacaaaa--tgtcatttattcatcc |
29505271 |
T |
|
| Q |
274 |
tttgctattcctacccataaccagacagtcaagggtgtgaactccacactgctaacc |
330 |
Q |
| |
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||| |||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |
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| T |
29505272 |
tttcctattcctactcttaaccaaacagtcaagagtgtgaactccacactgctaacc |
29505328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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