View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13317_low_2 (Length: 272)
Name: NF13317_low_2
Description: NF13317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13317_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 34228872 - 34229117
Alignment:
| Q |
10 |
ataattctcaaagcaagatactttcttcacacatattttttcttgaagctgacattagtcacagccctagttatgcctagagtagtatttggaatactag |
109 |
Q |
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| T |
34228872 |
ataattctcaaagcaagatactttcttcacacatattttttcttgaagctgacattagtcacagccctagttatgcctagcgtagtatttggaatactag |
34228971 |
T |
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| Q |
110 |
atatgtgattttacatggttgtagatggcggattggtgatggtagtaatgttagaatcatgatggattcattgctcaaaggagacaaaggaaaatggttg |
209 |
Q |
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| T |
34228972 |
atatgtgattttacatggttgtagatggcggattggtgatggtagtaatgttagaatcatgatggattcattgctcagaggagacaaaggaaaatggctg |
34229071 |
T |
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| Q |
210 |
caatcacaccaaaaccaaggtgtgtataacatgcatgttaatcaat |
255 |
Q |
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| T |
34229072 |
caatcacaccaaaaccaaggtgtgtttaacatgcatgctaatcaat |
34229117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 34237494 - 34237548
Alignment:
| Q |
12 |
aattctcaaagcaagatactttcttcacacatattttttcttgaagctgacattagt |
68 |
Q |
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| T |
34237494 |
aattctcaaatcaatatactttctccacacata--ttttcttgaagctgacattagt |
34237548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 46889177 - 46889100
Alignment:
| Q |
93 |
agtatttggaatactagatatgtgattttacatggttgtagatggcggattggtgatggtagtaatgttagaatcatg |
170 |
Q |
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| T |
46889177 |
agtatttggaattctagacatgtgttttcacatgcttgtagatggaggattggtgatggtaagaatgttagaatcatg |
46889100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 42093100 - 42093134
Alignment:
| Q |
118 |
ttttacatggttgtagatggcggattggtgatggt |
152 |
Q |
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| T |
42093100 |
ttttacatggttgtagatggaggattggtgatggt |
42093134 |
T |
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