View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13318_high_5 (Length: 254)
Name: NF13318_high_5
Description: NF13318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13318_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36103555 - 36103315
Alignment:
| Q |
1 |
tcactacattatatctttaaccataaagtttagtagcataaggacatgaacaaagcaatttagaaaaattgctcaaggttttttcttttagcccaaatgt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36103555 |
tcactatattatatctttaaccataaagtttagtagcataaggacatgaacaaagcaatttagaaaaattgctccaggttttttcttttagcccaaatgt |
36103456 |
T |
|
| Q |
101 |
atatatgnnnnnnnn-ctagcttgacagtatatattaataatttcagcaaacttgaaagtttgttcccactaggtagaattgcctatccacggcaatact |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36103455 |
atatatgaaaaaaaaactagcttgacagtatatattaataatttcagcaaacttgaaagtttgttcccactaggtagaattgcctatccacggcaatact |
36103356 |
T |
|
| Q |
200 |
taagagtttagatcatcaacaatgctaaaggctgttttcat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36103355 |
taagagtttagatcatcaacaatgctaaaggctgttttcat |
36103315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 36141853 - 36141628
Alignment:
| Q |
16 |
tttaaccataaagtttagtagcataaggacatgaacaaagcaatttagaaaaattgctcaaggttttttcttttagcccaaatgtatatatgnnnnnnnn |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36141853 |
tttaaccataaagtttagtagcataaggacatgaacaaagcaatttagaaaaattgctcaaggttttttcttatagcccaaatgtatatatgaaaaaaaa |
36141754 |
T |
|
| Q |
116 |
-ctagcttgacagtatatattaataatttcagcaaacttgaaagtttgttcccactaggtagaattgcctatccacggcaatacttaagagtttagatca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
36141753 |
actagcttgacagtatatattaataatttcagcaaacttgaaagtttgttcccactaggtagaattgcctatccacgacaatacttaagagcttagatca |
36141654 |
T |
|
| Q |
215 |
tcaacaatgctaaaggctgttttcat |
240 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
36141653 |
tcaacaatgctaaaggttgttttcat |
36141628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 10856741 - 10856516
Alignment:
| Q |
16 |
tttaaccataaagtttagtagcataaggacatgaacaaagcaatttagaaaaattgctcaaggttttttcttttagcccaaatgtatatatgnnnnnnnn |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
10856741 |
tttaaccataaagtttagtagcataaggacatgaacaaagcaatttagaaaaattgctcaacgttttttcttatagcccaaatgtacatatgaaaaaaaa |
10856642 |
T |
|
| Q |
116 |
-ctagcttgacagtatatattaataatttcagcaaacttgaaagtttgttcccactaggtagaattgcctatccacggcaatacttaagagtttagatca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10856641 |
actagcttgacagtatatattaataatttcagcaaacttgaaagtttgttcccactaggtagaattgcctatccacggcaatacgtaagagtttagatca |
10856542 |
T |
|
| Q |
215 |
tcaacaatgctaaaggctgttttcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
10856541 |
tcaacaatgctaaaggctgttttcat |
10856516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University