View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13318_low_1 (Length: 845)
Name: NF13318_low_1
Description: NF13318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13318_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 11314458 - 11313781
Alignment:
| Q |
1 |
tcttggctaaaaatgggattgcactgatgcaggtctggtacgtgccaccacacgcgcgtaggttgtcacagatccaatcatgcatacgttcacaattctc |
100 |
Q |
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| T |
11314458 |
tcttggctaaaaatgggattgcacagatgcaggtctggtacgtgccaccacacgcgcgtaggttgtcacagatccaatcatgcatacgttcacaattctc |
11314359 |
T |
|
| Q |
101 |
aatgaggcctggtagactgcccaatagtggccagacacgtgggcctctcaatgaccgtgagatgaaggagaaccaaagcaagtaagctgttatggccgtt |
200 |
Q |
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| T |
11314358 |
aatgaggcccggtagactgcccaatagtggccagacacgtgggcctctcaatgaccgtgagatgaaggtgaaccaaagcaagtaagctgttatggccgtt |
11314259 |
T |
|
| Q |
201 |
aaaagtaatagagccgtacaagtttccattttttgaacacaccaaccaaacagtcttaaacttgttaactttgacgtgcagtttaatgttgtcacacaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11314258 |
aaaagtaatagagccgtacaagtttccattttttgaacacaccaaccaaacagtcttaaacttgttaactttgatgtgcagtttaatgttgtcacacaac |
11314159 |
T |
|
| Q |
301 |
ccaagaatcaaaagctcagccctacaagaaaatttaatcaaaactttagtctttttacataattaaaaaatggggtgataatattgtcacaacccaaaat |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11314158 |
ccaagaatcaaaagctcaaccctacaagaaaatttaatcaaaactttagtctttttacataattaaaaaatgaggtgataatattgtcacaacccaaaat |
11314059 |
T |
|
| Q |
401 |
tcaaaagcttaaaactacaagataattcaatcaaaagtctaannnnnnnncattcataaaagnnnnnnnntgaggtatagtataatgttataacaatcca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11314058 |
tcaaaagcttaaaactacaagataattcaatcaaaagtctaattttttttcattcataaaagaaaaaaaatgaggtatagtataatgttataacaatcca |
11313959 |
T |
|
| Q |
501 |
agaatcaaaagctcaagcatacaagaaaatgaatggtaactagtaatgttttcaccccaataatcaaaatctcaagcctaa---------------tttt |
585 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11313958 |
agaatcaaaagctcaagcatacaagaaaatgaatggtaactagtaatgttttcaccccaataatcaaaatctcaagcctaatagaaagtttaatattttt |
11313859 |
T |
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| Q |
586 |
tcttccataaatacaaaaatggggtatagtaataatggtgtcatcccatgaatcaatatcttaagcctactagaaagt |
663 |
Q |
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| T |
11313858 |
tcttccataaatacaaaaatggggtatagtaataatggtgtcatcccatgaatcaatatcttaagcctactagaaagt |
11313781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 689 - 835
Target Start/End: Complemental strand, 11313735 - 11313589
Alignment:
| Q |
689 |
gtgcatgggaaaatgcatgagaaagtaatatatgtttacctttcaagaaataatggttcaaggttgagctagtgttgttgtaaatgtgaagaatgaagaa |
788 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11313735 |
gtgcatgggaaaatgcatgagaaagtaatatatgtttacctttcaagaaataatggttcaaggttgagctagtgttgttgtaaatgtgaagaatgaagaa |
11313636 |
T |
|
| Q |
789 |
ggatgaagaagagagagtgagagtagcgtattattattatgatgatg |
835 |
Q |
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||| || ||||||| ||||||||||| |||||||||||||||||||| |
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| T |
11313635 |
ggaggaggaagagaaagtgagagtagtgtattattattatgatgatg |
11313589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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