View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13318_low_2 (Length: 679)
Name: NF13318_low_2
Description: NF13318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13318_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 17 - 679
Target Start/End: Original strand, 3879502 - 3880166
Alignment:
| Q |
17 |
aattctattattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttannnnnnnga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3879502 |
aattctattattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttatttttttga |
3879601 |
T |
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| Q |
117 |
atggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaatatcac |
216 |
Q |
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| T |
3879602 |
atggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaatatcac |
3879701 |
T |
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| Q |
217 |
ttcaaattcacttcaagtatgtgttatacacttatacttatgtcttgtttcattccccattctcatatattctagagtatatgcagaaattagcactgca |
316 |
Q |
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| T |
3879702 |
ttcaaattcacttcaagtatgtgttatacacttatacttatgtcttgtttcattccccattctcatatattctagagtatatgcagacattagcactgca |
3879801 |
T |
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| Q |
317 |
aaaacaggatagcttaacttcattagcattgcaatgccaatctttccaataagtggatctc--tgagtgtgaatctttgacaaattctatatgtggtgtt |
414 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
3879802 |
aaagcaggatagcttaacttcattagcattgcaatgccaatctttccaagaagtggatctctctgagtgtgaatctttgacaaattctatatgtgatgtt |
3879901 |
T |
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| Q |
415 |
tttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaacaaatatttcttttgaatttctggatttattttc |
514 |
Q |
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| T |
3879902 |
tttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaacaaatatttcttttgaatttctggatttattttc |
3880001 |
T |
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| Q |
515 |
caaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaataagtgttttcctactcttgatcccttttacacaattctaatt |
614 |
Q |
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| T |
3880002 |
caaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaataagtgttttcctactcttgatcccttttacacaattctaatt |
3880101 |
T |
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| Q |
615 |
gttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgcgtgtgatt |
679 |
Q |
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| T |
3880102 |
gttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgcttgtgatt |
3880166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 296 - 480
Target Start/End: Original strand, 3865805 - 3865991
Alignment:
| Q |
296 |
tatgcagaaattagcactgcaaaaacaggatagcttaacttcattagcattgcaatgccaatctttccaataagtgga--tctctgagtgtgaatctttg |
393 |
Q |
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| T |
3865805 |
tatgcagaaattagcactgcaaaagcaggatagcttaactacattagcgctgcaatgccaatctttacaagaagtggacctctctgagtgtgaatcattg |
3865904 |
T |
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| Q |
394 |
acaaattctatatgtggtgtttttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaa |
480 |
Q |
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| T |
3865905 |
acaaacactgtatgtgatgtttttagtgacggtggaggatgtcccatgttgaaatcactagttcttgataattgtgaggtacatgaa |
3865991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 3865609 - 3865732
Alignment:
| Q |
115 |
gaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaatatc |
214 |
Q |
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| T |
3865609 |
gaatggtttccttggcagattagcagatttgaatttgagagctatatcgctttcttctatacaagtgtctaactgctctgtactccaccggatcaatatc |
3865708 |
T |
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| Q |
215 |
acttcaaattcacttcaagtatgt |
238 |
Q |
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| T |
3865709 |
acttcaaattcacttcaagtatgt |
3865732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 576 - 616
Target Start/End: Original strand, 3866120 - 3866160
Alignment:
| Q |
576 |
tgttttcctactcttgatcccttttacacaattctaattgt |
616 |
Q |
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| T |
3866120 |
tgttttcccactcttgatcctttctacacaattctaattgt |
3866160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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