View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13318_low_9 (Length: 240)

Name: NF13318_low_9
Description: NF13318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13318_low_9
NF13318_low_9
[»] chr3 (2 HSPs)
chr3 (3-220)||(36103550-36103767)
chr3 (1-222)||(36141875-36142098)
[»] chr1 (1 HSPs)
chr1 (1-222)||(10856763-10856986)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 36103550 - 36103767
Alignment:
Q  3 tagtgaatatctaatatctaatataaattcaaccaaaagaaagataggaatgcaaaagcttaattttatcaaatttttagtgtttactttgatttaattg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36103550 tagtgaatatctaatatctaatataaattcaaccaaaagaaagataggaatgcaaaagcttaattttatcaaatttttagtgtttactttgatttaattg 36103649  T
Q  103 atctaaaactttgacatgcattggttgtttattgacaaacttttcctctcagttgtacgatatagtgcgcaaagaaatatggtaccggccggacatgttc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36103650 atctaaaactttgacatgcattggttgtttattgacaaacttttcctctcagttgtacgatatagtgcgcaaagaaatatggtaccggccggacatgttc 36103749  T
Q  203 ttttatagggacatgctt 220  Q
    ||||||||||||||||||    
T  36103750 ttttatagggacatgctt 36103767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36141875 - 36142098
Alignment:
Q  1 tgtagtgaatatctaatatctaatataaattcaaccaaaagaaagataggaatgcaaaagcttaattttatcaaatttttagtgtttactttgatttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36141875 tgtagtgaatatctaatatctaatataaattcaaccaaaagaaagataggaatgcaaaagcttaattttatcaaatttttagtgtttactttgatttaat 36141974  T
Q  101 tgatctaaaactttgacatgcattggttgtttattgacaaacttttc--ctctcagttgtacgatatagtgcgcaaagaaatatggtaccggccggacat 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36141975 tgatctaaaactttgaaatgcattggttgtttattgacaaacttttcctctctcagttgtacgatatagtgcgcaaagaaatatggtaccgaccggacat 36142074  T
Q  199 gttcttttatagggacatgcttat 222  Q
    ||||||||||||||||||||||||    
T  36142075 gttcttttatagggacatgcttat 36142098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10856763 - 10856986
Alignment:
Q  1 tgtagtgaatatctaatatctaatataaattcaaccaaaagaaagataggaatgcaaaagcttaattttatcaaatttttagtgtttactttgatttaat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10856763 tgtagtgaatatctaatatctaatataaattgaaccaaaagaaagataggaatgcaaaagcttaattttatcaaatttttagtgtttactttgatttaat 10856862  T
Q  101 tgatctaaaactttgacatgcattggttgtttattgacaaacttttcc--tctcagttgtacgatatagtgcgcaaagaaatatggtaccggccggacat 198  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10856863 tgatctaaaactttgaaatgcattggttgtttattgacaaacttttcctttctcagttgtacgatatagtgcgcaaagaaatatggtaccggccggacat 10856962  T
Q  199 gttcttttatagggacatgcttat 222  Q
    ||||||||||||||||||||||||    
T  10856963 gttcttttatagggacatgcttat 10856986  T

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