View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13319_low_1 (Length: 618)
Name: NF13319_low_1
Description: NF13319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13319_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 13 - 604
Target Start/End: Original strand, 51740628 - 51741219
Alignment:
| Q |
13 |
atcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaa |
112 |
Q |
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| T |
51740628 |
atcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaa |
51740727 |
T |
|
| Q |
113 |
tccaatttattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgattatggtggcaatgacgtcgttgaaattaataattcattagatgcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740728 |
tccaatttattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgattatggtggcaatgacgtcgttgaaattaataattcattagatgcat |
51740827 |
T |
|
| Q |
213 |
tcactgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740828 |
tcactgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagt |
51740927 |
T |
|
| Q |
313 |
atcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggttcttaga |
412 |
Q |
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| T |
51740928 |
atcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggttcttaga |
51741027 |
T |
|
| Q |
413 |
cacgcaccttgttcagtaggtgttattatcgaaagagggatgtctaaggtccctggtttctcacagttgattacatctgatagtacgaaaaacgttgcaa |
512 |
Q |
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| T |
51741028 |
cacgcaccttgttcagtaggtgttattatcgaaagagggatgtctaaggtccctggtttctcacaattgattacatctgatagtacgaaaaacgttgcaa |
51741127 |
T |
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| Q |
513 |
cacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcaga |
604 |
Q |
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| T |
51741128 |
cacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcaga |
51741219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 450
Target Start/End: Original strand, 10201430 - 10201863
Alignment:
| Q |
20 |
atacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaatccaatt |
119 |
Q |
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| T |
10201430 |
atactagccacaatactagcaatacatggctctaaaacatcaccttccaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
10201529 |
T |
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| Q |
120 |
tattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgat---tatggtggcaatgacgtcgttgaaattaataattcattagatgcattcac |
216 |
Q |
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| || | |||||||| ||||||| || | || || ||||| || | |||||| ||||| || || || ||||||||| | ||||| | ||||| |
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| T |
10201530 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
10201629 |
T |
|
| Q |
217 |
tgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagtatca |
316 |
Q |
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|| |||||||||||||||||| || |||| |||| |||| || ||||||| ||| |||||||||| || |||| ||||| ||| ||||||||||||| |
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| T |
10201630 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
10201729 |
T |
|
| Q |
317 |
attatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggttcttagacacg |
416 |
Q |
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||||| |||||||| |||||||||||||||||||| ||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
10201730 |
attattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggttcttaggcatg |
10201829 |
T |
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| Q |
417 |
caccttgttcagtaggtgttattatcgaaagagg |
450 |
Q |
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| T |
10201830 |
caccttgttctgtcggtgtaattatagaaagagg |
10201863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 501 - 600
Target Start/End: Original strand, 10201914 - 10202013
Alignment:
| Q |
501 |
aaaacgttgcaacacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcat |
600 |
Q |
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|||| |||||||||||||| |||||||| ||||| || || |||||| | |||||||||||| | ||||||||||||||||| ||||| |||||||||| |
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| T |
10201914 |
aaaatgttgcaacacttttttttggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgccctcgaattaacttgacaatcat |
10202013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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