View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13319_low_2 (Length: 600)
Name: NF13319_low_2
Description: NF13319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13319_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 54 - 582
Target Start/End: Complemental strand, 7195487 - 7194970
Alignment:
| Q |
54 |
tcacctgttaccaagaagacgatgaagtcttatgatcatgtcttcttcgtcggtagagatatcgcctctctttatacctggtttgagataattcaaccat |
153 |
Q |
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| T |
7195487 |
tcacctgttaccaagaagacgatgaagtcttatgatcatgtcttcttcgtcggtagagatatggcctctctttatacctggtttgagataattcaaccat |
7195388 |
T |
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| Q |
154 |
ctttgtctacaactttttccacaccgctttaaacctacaccatataaaccaaagagaccaatcgaaaactatttaagaaaaattataatagacaacatga |
253 |
Q |
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| T |
7195387 |
ctttgtctacaactttttccacaccgctttaaacctactccatataaaccaaagagaccaatcgaaaactatttaagaaaaattataatagacaacatga |
7195288 |
T |
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| Q |
254 |
tcttctgccacggccaaatcggattcaaaatctaaggacatgcatggaacaatcttgtatcctctacggtctctctagacaaacctctcggccattcaaa |
353 |
Q |
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| T |
7195287 |
tcttctgccacggccaaatcggattcaaaatctaaggacatgcatggaacaatcttgtatcctctacagtctctctagacaaacctctcggccattcaaa |
7195188 |
T |
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| Q |
354 |
taaatccaactatcaagatttgtttagatttgtttggagagacagcaaaggatacaagtctcatgaaaacacattgaatggcaacctataatatagttgt |
453 |
Q |
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| T |
7195187 |
ttaatccaactatcaagattt----------gtttggagagacaggaaaggatacaagtctcatgaaaacacattgaatggcaa-ctataatatagttgt |
7195099 |
T |
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| Q |
454 |
gcattagagaaaatcagtaattaatttagcacctgcattttgggcaaccttttgccattttccttctccatgaatgacaacatatttggagaggatatca |
553 |
Q |
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| T |
7195098 |
gcattagagaaaatcagtaattaatttagcacctgcattttgggcaaccttttgccattttccttctccatgaatgacaacatatttggagaggatatca |
7194999 |
T |
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| Q |
554 |
tcttcttcacgagaccaagcacctttatt |
582 |
Q |
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| T |
7194998 |
tcttcttcacgagaccaagcacctttatt |
7194970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 9622004 - 9621946
Alignment:
| Q |
118 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
176 |
Q |
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| T |
9622004 |
cctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccaca |
9621946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 52071733 - 52071792
Alignment:
| Q |
117 |
gcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
176 |
Q |
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| T |
52071733 |
gcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccaca |
52071792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 48892615 - 48892673
Alignment:
| Q |
118 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
176 |
Q |
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| T |
48892615 |
cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca |
48892673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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