View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13319_low_4 (Length: 420)

Name: NF13319_low_4
Description: NF13319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13319_low_4
NF13319_low_4
[»] chr2 (6 HSPs)
chr2 (17-353)||(13143477-13143813)
chr2 (354-396)||(35298556-35298599)
chr2 (353-398)||(31620524-31620570)
chr2 (357-401)||(4755049-4755094)
chr2 (354-396)||(35306127-35306170)
chr2 (354-397)||(40894888-40894932)
[»] chr1 (4 HSPs)
chr1 (351-401)||(26529505-26529556)
chr1 (354-401)||(36575550-36575598)
chr1 (354-401)||(26531103-26531151)
chr1 (354-396)||(26530502-26530545)
[»] chr6 (5 HSPs)
chr6 (354-401)||(9448779-9448827)
chr6 (354-399)||(11020403-11020449)
chr6 (354-397)||(226121-226165)
chr6 (354-397)||(18193022-18193066)
chr6 (354-399)||(18191746-18191792)
[»] chr8 (6 HSPs)
chr8 (353-400)||(12887739-12887787)
chr8 (354-396)||(5005708-5005751)
chr8 (354-396)||(5014842-5014885)
chr8 (354-397)||(17863466-17863510)
chr8 (357-399)||(32564510-32564553)
chr8 (354-401)||(12888257-12888305)
[»] chr7 (4 HSPs)
chr7 (354-401)||(38516620-38516668)
chr7 (354-397)||(45291970-45292014)
chr7 (354-397)||(45296095-45296139)
chr7 (355-397)||(40601839-40601882)
[»] chr4 (7 HSPs)
chr4 (353-396)||(41780271-41780315)
chr4 (354-397)||(52189186-52189230)
chr4 (354-396)||(41774644-41774687)
chr4 (352-401)||(31410623-31410673)
chr4 (358-401)||(23545362-23545406)
chr4 (354-397)||(30829927-30829971)
chr4 (354-397)||(52190386-52190430)
[»] chr5 (1 HSPs)
chr5 (355-397)||(16727813-16727856)
[»] chr3 (7 HSPs)
chr3 (350-396)||(20997629-20997676)
chr3 (354-399)||(36164591-36164637)
chr3 (347-394)||(18912541-18912589)
chr3 (354-396)||(9099560-9099603)
chr3 (354-396)||(18939872-18939915)
chr3 (353-401)||(11137911-11137960)
chr3 (354-397)||(19801786-19801830)
[»] scaffold0115 (2 HSPs)
scaffold0115 (354-397)||(6097-6141)
scaffold0115 (354-397)||(13837-13881)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 13143813 - 13143477
Alignment:
Q  17 tcaacgtcgcagctagctactcttcttcaacaatgttgtttgaagtcgtcgaaaaacagaaagaatggttctggtcgacataaactttacaagtgaaggt 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13143813 tcaatgtcgcagctagctactcttcttcaacaatgttgtttgaagtcgtcgaaaaacagaaagaatggttctggtcgacataaaccttataagtgaaggt 13143714  T
Q  117 gccaaagtcagatgaaacttgtgttatatcaatgggcatgttgatgaatctttgaaagttggcgaggattatataaaagaatggaatgttgtggaaggaa 216  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  13143713 gccaaagtcagatgaaactcgtgttatatcaataggcatgttgatgaatctttgaaagttggtgaggattatagaaaagaatggaatgttgttgaaggaa 13143614  T
Q  217 tatgttgagactgttatagagtttgggagaaaaggagaatgatgaatgtagtgattggatggaaagaaagaaaggagaatcgtatagattttaaaacatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13143613 tatgttgagactgttatagagtttgggagaaaaggagaatgatgaatgtagtgattggatggaaagaaagaaaggagaatcgtatagattttaaaacatg 13143514  T
Q  317 aatgaaagggtgaataactagaagtgaatcaagtaac 353  Q
    |||||||||||||||||||||||||||||||||||||    
T  13143513 aatgaaagggtgaataactagaagtgaatcaagtaac 13143477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 35298556 - 35298599
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatca 396  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  35298556 gagtaaaccctcatttgggttcctgaaagtgtacctcgctatca 35298599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 31620524 - 31620570
Alignment:
Q  353 cgagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcaga 398  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  31620524 cgagtaaaccctcatttgagtccctgaaagtgtacctcgctatcaga 31620570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 4755094 - 4755049
Alignment:
Q  357 taaaccctcatttgggtc-ctgaaagtgtacctcgctatcagacac 401  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  4755094 taaaccctcatttgggtctctgaaagtgtccctcgctatcagacac 4755049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 35306170 - 35306127
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatca 396  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  35306170 gagtaaaccctcatttaggtccctgaaagtgtacctcgctatca 35306127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 40894932 - 40894888
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||    
T  40894932 gagtaaaccctcatttggatccctaaaagtgtacctcgctatcag 40894888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 26529505 - 26529556
Alignment:
Q  351 aacgagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagacac 401  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26529505 aacgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacac 26529556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 36575598 - 36575550
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagacac 401  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacac 36575550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 26531151 - 26531103
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagacac 401  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  26531151 gagtaaaccctcattttggtccctgaaagtgtacctcgctattagacac 26531103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 26530502 - 26530545
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatca 396  Q
    ||||||||| |||||||||||| |||||||||||||||||||||    
T  26530502 gagtaaaccttcatttgggtccctgaaagtgtacctcgctatca 26530545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 9448827 - 9448779
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagacac 401  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacac 9448779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 11020449 - 11020403
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagac 399  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  11020449 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagac 11020403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 226121 - 226165
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcag 226165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 18193066 - 18193022
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  18193066 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcag 18193022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 18191746 - 18191792
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcagac 399  Q
    |||||||||||||||||||| ||||||||||| || |||||||||||    
T  18191746 gagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagac 18191792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 400
Target Start/End: Complemental strand, 12887787 - 12887739
Alignment:
Q  353 cgagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagaca 400  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  12887787 cgagtaaaccctcatttgggtccctgaaagtgtacctcgcgatcagaca 12887739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 5005708 - 5005751
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatca 396  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatca 5005751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 5014885 - 5014842
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatca 396  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  5014885 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatca 5014842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 17863466 - 17863510
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  17863466 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcag 17863510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 32564510 - 32564553
Alignment:
Q  357 taaaccctcatttgggtcc-tgaaagtgtacctcgctatcagac 399  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  32564510 taaaccctcatttgggtccttgaaagtgtccctcgctatcagac 32564553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 12888305 - 12888257
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagacac 401  Q
    ||||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  12888305 gagtaaatcctcatttgagtccctgaaattgtacctcgctatcagacac 12888257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 38516620 - 38516668
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagacac 401  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacac 38516668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 45292014 - 45291970
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcag 45291970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 45296139 - 45296095
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcag 45296095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 40601882 - 40601839
Alignment:
Q  355 agtaaaccctcatttgggt-cctgaaagtgtacctcgctatcag 397  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||    
T  40601882 agtaaaccctcatttgggtccctgaaagtgtgcctcgctatcag 40601839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 41780315 - 41780271
Alignment:
Q  353 cgagtaaaccctcatttgggtc-ctgaaagtgtacctcgctatca 396  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  41780315 cgagtaaaccctcatttgggtctctgaaagtgtacctcgctatca 41780271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 52189186 - 52189230
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcag 52189230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 41774644 - 41774687
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatca 396  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatca 41774687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 31410673 - 31410623
Alignment:
Q  352 acgagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcagacac 401  Q
    ||||||||||||| |||| ||| |||||||||| |||||||||||||||||    
T  31410673 acgagtaaacccttatttaggttcctgaaagtgcacctcgctatcagacac 31410623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 23545406 - 23545362
Alignment:
Q  358 aaaccctcatttgggtcct-gaaagtgtacctcgctatcagacac 401  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacac 23545362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 30829927 - 30829971
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcag 30829971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 52190430 - 52190386
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||| |||||||||| | |||||||||||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcag 52190386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 16727813 - 16727856
Alignment:
Q  355 agtaaaccctcatttgggtc-ctgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcag 16727856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 20997629 - 20997676
Alignment:
Q  350 taacgagtaaaccctcatttgggt-cctgaaagtgtacctcgctatca 396  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  20997629 taacgagtaaaccctcatttgggtccctgaaaatgtacctcgctatca 20997676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 36164637 - 36164591
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcagac 399  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  36164637 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagac 36164591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 18912541 - 18912589
Alignment:
Q  347 aagtaacgagtaaaccctcatttgggt-cctgaaagtgtacctcgctat 394  Q
    |||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  18912541 aagtaatgagtaaaccctcatttgggtccctgaaagtgtacctcactat 18912589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 9099560 - 9099603
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatca 396  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  9099560 gagtaaaccctcatttgggtcccttaaagtgtacctcgctatca 9099603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 18939915 - 18939872
Alignment:
Q  354 gagtaaaccctcatttgggt-cctgaaagtgtacctcgctatca 396  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  18939915 gagtaaaccctcatttgggtccctgaaagtgtacttcgctatca 18939872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 11137911 - 11137960
Alignment:
Q  353 cgagtaaaccctcatttgggtc-ctgaaagtgtacctcgctatcagacac 401  Q
    ||||||||||||||||||| || || ||| ||||||||||||||||||||    
T  11137911 cgagtaaaccctcatttggttctctaaaaatgtacctcgctatcagacac 11137960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 19801786 - 19801830
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcag 397  Q
    |||||||||||||||  ||||| ||||||||||||||||||||||    
T  19801786 gagtaaaccctcattccggtccctgaaagtgtacctcgctatcag 19801830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 6141 - 6097
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcag 397  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcag 6097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 13881 - 13837
Alignment:
Q  354 gagtaaaccctcatttgggtcc-tgaaagtgtacctcgctatcag 397  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcag 13837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University