View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13319_low_5 (Length: 351)
Name: NF13319_low_5
Description: NF13319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13319_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 189 - 351
Target Start/End: Original strand, 39005795 - 39005957
Alignment:
| Q |
189 |
actggctctatgtcaattttctcagacaacccaaaaacctcaaaaactatggatcttgggccctcgttactggacccaccgatggcattggaaaatcctt |
288 |
Q |
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| T |
39005795 |
actggttctatgtcaattttctcagacaacccaaaaacctcaaaaactatggatcttgggccctcgttactggacccaccgatggcattggaaaatcctt |
39005894 |
T |
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| Q |
289 |
ctcctttgaactcgctcgcaaaggcttgaacctaatcctcgttggtcgtaaccccgaaaaact |
351 |
Q |
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| T |
39005895 |
cgcctttgaactcgctcgcaaaggcttgaacctaatcctcgttggtcgtaaccccgaaaaact |
39005957 |
T |
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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 27439197 - 27439295
Alignment:
| Q |
19 |
tatacgacttatgtccattacgctgttaaacatcatagataatatcgaaaagaaagtgtaattttacatattttgattgaagaaaaatctataaatatt |
117 |
Q |
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| T |
27439197 |
tatacgacttatgtccattacgctgttaaacatcatagataatatcgaaaagaaagtgtaattttacatattttgattgaagaaaaacctataaatatt |
27439295 |
T |
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