View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1331_high_1 (Length: 520)
Name: NF1331_high_1
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 35 - 504
Target Start/End: Original strand, 3669126 - 3669595
Alignment:
| Q |
35 |
aaacgacaccgtttcgtttcggtgtctcctccttgaaaacgacaccgtttcgtttcggtgtaacgtttttcttcggttccataaacttcgctgctactat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3669126 |
aaacgacaccgtttcgtttcggtgtctcctccttgaaaacgacaccgtttcgtttcggtgtaacgtttttcttcggttccataaacttcgctgctactat |
3669225 |
T |
|
| Q |
135 |
tcttccagtaccaattccactaacacgcttttcagaagcgatttttctttcagctttttcaacacgaagcaattccagcttcgaagttaatcgcttaatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3669226 |
tcttccagtaccaattccactaacacgcttttcagaagcgatttttctttcagctttttcaacacgaagcaattccagcttcgaagttaatcgcttaatt |
3669325 |
T |
|
| Q |
235 |
tcactttcaatttccgcgatttcgtcgtcaatggttcttttgtttgaagaaggaacaatgttgaatgcggatgggtttagattctctttgatggaatcag |
334 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3669326 |
tcactttcaatttccgcaatttcatcatcaatagttcttttgtttgaagaaggaacaatgttgaatgcggatgggtttagattctctttgatggaatcag |
3669425 |
T |
|
| Q |
335 |
aagacgaattcatggcaaaatcttcaccgtcgaatgctgcgttgttccacacttgaacctgtgtggaatgaagaagaatgttgttgttgtttgtgttatt |
434 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3669426 |
aagatgaattcatggcgaaatcttcaccatcgaatgctgcgttgttccacacttgaacctgtgtggaatgaagaagaatgttgttgttgtttgtgttatt |
3669525 |
T |
|
| Q |
435 |
catggttaagtgcttttttatttaagtgcttttgggagaaaggtttcaagatttaagaagaatctgatta |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3669526 |
catggttaagtgcttttttatttaagtgcttttgggagaaaggtttcaagatttaagaagaatctgatta |
3669595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3669128 - 3669186
Alignment:
| Q |
1 |
acgacaccgtttcgtttcggtgtctcctccttgaaaacgacaccgtttcgtttcggtgt |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3669128 |
acgacaccgtttcgtttcggtgtctcctccttgaaaacgacaccgtttcgtttcggtgt |
3669186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University