View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_high_11 (Length: 265)
Name: NF1331_high_11
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7387392 - 7387612
Alignment:
| Q |
1 |
tttcatagttttggcaacaactttcaactgttgctgaaagggataaatgttgtagtgattattgacaagaatgattagagtataaaattggataaagaaa |
100 |
Q |
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| T |
7387392 |
tttcacagttctggcaacaattttcaactgttgctaaaaag-ataaacgttgtagtaattattgacaagaatggttagagtataaaattggataatgaaa |
7387490 |
T |
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| Q |
101 |
ttagaaaaagaatcaatttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaactagaagcttttctcctctt |
200 |
Q |
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| T |
7387491 |
ttagaaaaagaatcaatttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaactagaagcttttctcctctt |
7387590 |
T |
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| Q |
201 |
aattcaggacttaagtatggca |
222 |
Q |
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| T |
7387591 |
aattcaggacttaagtatggca |
7387612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 48101600 - 48101496
Alignment:
| Q |
118 |
ttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaactagaagcttttctcctcttaattcaggacttaagta |
217 |
Q |
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| T |
48101600 |
ttacaaattgaactccagtatcgttgagaatgccaattccagctgaagcaaaattggctccagctaaaagcttttcacctcttagtcgtggactcaagta |
48101501 |
T |
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| Q |
218 |
tggca |
222 |
Q |
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||||| |
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| T |
48101500 |
tggca |
48101496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 48074786 - 48074720
Alignment:
| Q |
118 |
ttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaactag |
184 |
Q |
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| T |
48074786 |
ttacaaattgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactag |
48074720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 1808116 - 1808047
Alignment:
| Q |
118 |
ttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaactagaag |
187 |
Q |
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| T |
1808116 |
ttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaag |
1808047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 29768824 - 29768890
Alignment:
| Q |
115 |
aatttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaac |
181 |
Q |
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| T |
29768824 |
aatttacaaattgaatgccggtgtcattaagaattccaatcccagctgaagcaaaattggctccaac |
29768890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 6342780 - 6342842
Alignment:
| Q |
118 |
ttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaa |
180 |
Q |
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| T |
6342780 |
ttacaaattgaactccagtgtcattgagaattccaatcccagcagaagcaaagttagcaccaa |
6342842 |
T |
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