View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_11 (Length: 404)
Name: NF1331_low_11
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 404
Target Start/End: Original strand, 14526932 - 14527309
Alignment:
| Q |
28 |
caagcatctttgttccgaattttgttgcgactatggagaagattagcgagcagatgcgcagtaccggcttcggcacagcagttacagggacaggacctga |
127 |
Q |
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| T |
14526932 |
caagcatctttgttccgaattttgttgcaactatggagaagattagcgagcagatgcgcagtaccggcttcggcacagcagttacagggacaggacctga |
14527031 |
T |
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| Q |
128 |
tgataactatggcctagcacaatgctatggagatctttcattacttgactgtatgttgtgttatgctgaggcgcgcacggttcttcctcagtgcttccct |
227 |
Q |
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| T |
14527032 |
tgataactatggcctagcacaatgctatggatatctttcattacttgactgtgtgttgtgttatgctgaggcgcgcacggttcttcctcagtgcttccct |
14527131 |
T |
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| Q |
228 |
tataactccggtcacatttaccttgatggttgcttcacgaggtctgcgaactatagnnnnnnnagtgagtatacaggaaaagaagatagaactgtgtgtg |
327 |
Q |
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| T |
14527132 |
tataactccggtcgcatttaccttgatggttgcttcatgaggtctgtgaactatagtttttttagtgagtatacaggaaaagaagatagaactgtgtgtg |
14527231 |
T |
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| Q |
328 |
ggaacacaactaagaagagctcgggttttcaagcagcagcgaaggaggcagtgtt-aagagcggttcgagatgcaccg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14527232 |
ggaacacaactaagaagagctcgggttttcaagcagcagcgaaggaggcagtgttaaagagcggttcgagatgcaccg |
14527309 |
T |
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