View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1331_low_12 (Length: 349)

Name: NF1331_low_12
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1331_low_12
NF1331_low_12
[»] chr7 (14 HSPs)
chr7 (7-320)||(31438512-31438825)
chr7 (84-301)||(31572416-31572633)
chr7 (78-301)||(33304735-33304963)
chr7 (78-301)||(31541458-31541681)
chr7 (76-301)||(31576439-31576664)
chr7 (78-301)||(31614973-31615196)
chr7 (88-301)||(31532801-31533014)
chr7 (78-320)||(31585830-31586074)
chr7 (81-301)||(31608699-31608919)
chr7 (78-313)||(31618697-31618932)
chr7 (81-298)||(31595499-31595716)
chr7 (96-301)||(31605105-31605310)
chr7 (188-301)||(32351743-32351856)
chr7 (253-301)||(32355827-32355875)
[»] chr4 (1 HSPs)
chr4 (31-320)||(15062883-15063172)
[»] chr1 (1 HSPs)
chr1 (96-301)||(52173895-52174100)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 31438512 - 31438825
Alignment:
7 caagaatatctatcgaccaagatcatattgaggatttcattaaaagatttaatttgtcggtgccgaagtggtatagttatgcagaagcgaaaaggttcac 106  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
31438512 caagaatatctatcgaccaagatcatattgaggatttcataaaaagatataatttgtcggtgccaaagcggtatagttatgcagaagtgaaaaggttcac 31438611  T
107 aaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatgttgcggtgaaagtaataagtgag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31438612 aaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatgttgcggtgaaagtaataagtgag 31438711  T
207 tgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcacttttgggtttttgttatgaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31438712 tgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcacttttgggtttttgttatgaaaaga 31438811  T
307 acaaaagtgcattg 320  Q
    ||||||||||||||    
31438812 acaaaagtgcattg 31438825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 84 - 301
Target Start/End: Original strand, 31572416 - 31572633
Alignment:
84 tatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatg 183  Q
    |||||||||| ||||||  | |||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||  |||| |    
31572416 tatgcagaagtgaaaagaatgacaaactcatttcgagataaattaggttaaggaggatatggtgtcgtgtacaaagcaagtttacctgatggttgtcaag 31572515  T
184 ttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcact 283  Q
    | ||||| ||||||||||  || |  |||||||| ||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||    
31572516 tggcggttaaagtaataaacgaatctaagggagatggagaagaattcataaatgaagttgctagcattagtagaacatcacatgtgaacattgtctcact 31572615  T
284 tttgggtttttgttatga 301  Q
    ||||||||| ||||||||    
31572616 tttgggtttctgttatga 31572633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 78 - 301
Target Start/End: Original strand, 33304735 - 33304963
Alignment:
78 tatagttatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggcc 177  Q
    ||||| ||||||||||  |||||  | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |    
33304735 tatagatatgcagaagtaaaaagaatgacaaactcatttcgagataaattaggtcaaggaggatatggtgttgtgtacaaagcaagcttacctgatggtc 33304834  T
178 gtcatgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaa-----acatcacatgtgaac 272  Q
    |||| || || |||||||||||||  |||| ||||||| | |||||||||||||||||||||||||| ||||| |||| |     || ||||||||||||    
33304835 gtcaagtggcagtgaaagtaataaaagagtccaagggaaatggagaagaatttataaatgaagttgctagcattagtagaacgtcacgtcacatgtgaac 33304934  T
273 attgtctcacttttgggtttttgttatga 301  Q
    |||||||||||||||||||||||||||||    
33304935 attgtctcacttttgggtttttgttatga 33304963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 301
Target Start/End: Complemental strand, 31541681 - 31541458
Alignment:
78 tatagttatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggcc 177  Q
    ||||| |||||||||| |||||   | |||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||  ||||||||||| |    
31541681 tatagatatgcagaagtgaaaaaaatgacaaactcgtttcgagataaattaggtcaaggaggatatggtgttgtttacaaagcaaacttacctgatggtc 31541582  T
178 gtcatgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgt 277  Q
    |||| || || |||||| | |||| |||||  |||||| | |||||||| || |||||||||||||| ||||| |||| |||||||||||||||||||||    
31541581 gtcaagtagcagtgaaaattataaatgagtctaagggaaatggagaagatttcataaatgaagttgctagcattagtagaacatcacatgtgaacattgt 31541482  T
278 ctcacttttgggtttttgttatga 301  Q
    |||||||||||| |||||||||||    
31541481 ctcacttttgggattttgttatga 31541458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 301
Target Start/End: Complemental strand, 31576664 - 31576439
Alignment:
76 ggtatagttatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatgg 175  Q
    ||||||| ||| ||||||  |||||| |||||||||||||||| ||||| || || |||||||||||||||||||| |||||||||||||||  ||||||    
31576664 ggtatagatatacagaagtaaaaaggatcacaaactcatttcgggataaattaggccaaggaggatatggtgttgtttacaaagcaagtttaattgatgg 31576565  T
176 ccgtcatgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacatt 275  Q
     ||||| || |||||||||||||||| ||| | ||| ||| | ||||||||||| |||||||||||||| ||||| |||  |||||||||  ||||||||    
31576564 tcgtcaagtggcggtgaaagtaataaatgaatccaaaggaaatggagaagaattcataaatgaagttgctagcattagtcgaacatcacacatgaacatt 31576465  T
276 gtctcacttttgggtttttgttatga 301  Q
    || || ||||| || |||||||||||    
31576464 gtgtcccttttaggcttttgttatga 31576439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 301
Target Start/End: Complemental strand, 31615196 - 31614973
Alignment:
78 tatagttatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggcc 177  Q
    ||||||||| ||||||  |||||| | |||||||| || |||||||| || || ||||||||||||||||||||||||||||||||||||  |||||| |    
31615196 tatagttatacagaagtaaaaaggataacaaactctttccgagataaattaggccaaggaggatatggtgttgtgtacaaagcaagtttaattgatggtc 31615097  T
178 gtcatgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgt 277  Q
    ||||||| |||||||||||| ||| |||||  |||||| | ||||||||||| |||||||||||||| ||||| |||  ||||| |||  ||||||||||    
31615096 gtcatgtggcggtgaaagtactaaatgagtcaaagggaaatggagaagaattcataaatgaagttgctagcattagtcgaacattacacatgaacattgt 31614997  T
278 ctcacttttgggtttttgttatga 301  Q
     || ||||| || |||||||||||    
31614996 atcccttttaggcttttgttatga 31614973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 88 - 301
Target Start/End: Complemental strand, 31533014 - 31532801
Alignment:
88 cagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatgttgc 187  Q
    |||||| ||||||  | ||||||||||||||||| |  ||||||||||||||||||||| | || ||||||||||  ||||||||||| ||| | || ||    
31533014 cagaagtgaaaagaatgacaaactcatttcgagacagattgggtcaaggaggatatggtatggtttacaaagcaaacttacctgatggtcgtgaagtggc 31532915  T
188 ggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcacttttg 287  Q
    ||||||||||||||  ||||  |||||| |  |||||||||| | |||||||||||||||||| |||| |||||||||||||||||| || |||||||||    
31532914 ggtgaaagtaataaacgagtcaaagggaaatagagaagaattcacaaatgaagttgcaagcattagtagaacatcacatgtgaacatcgtttcacttttg 31532815  T
288 ggtttttgttatga 301  Q
    |||||||| |||||    
31532814 ggtttttgctatga 31532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 78 - 320
Target Start/End: Complemental strand, 31586074 - 31585830
Alignment:
78 tatagttatgcagaagcgaaaaggttcacaaactcatttcgaga--taagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatgg 175  Q
    ||||||||  ||||||  |||||| |||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||| |||||  ||||||    
31586074 tatagttacacagaagtaaaaaggatcacaaactcatttcgagagataaattaggtcaaggaggatatggtgttgtgtacaaagcatgtttaagtgatgg 31585975  T
176 ccgtcatgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacatt 275  Q
     |||||||| |||||||||||||||| |||    |||||| | ||||||||||| |||||||||||| | ||||| |||| |||||||||  | ||||||    
31585974 tcgtcatgtggcggtgaaagtaataaatgaaactaagggaaatggagaagaattcataaatgaagtttctagcattagtagaacatcacacatcaacatt 31585875  T
276 gtctcacttttgggtttttgttatgaaaagaacaaaagtgcattg 320  Q
    || |||||||| || ||||| |||||   ||||||||| ||||||    
31585874 gtatcacttttaggcttttgctatgaggtgaacaaaagagcattg 31585830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 81 - 301
Target Start/End: Complemental strand, 31608919 - 31608699
Alignment:
81 agttatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtc 180  Q
    |||||| ||||||  |||||| |||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||| | ||||| ||||    
31608919 agttatacagaagtaaaaaggatcacaaactcatttcgagataaattaggccatggaggatatggtgttgtgtacaaagcaagtttaacggatggtcgtc 31608820  T
181 atgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctc 280  Q
    | || || |||||||||||||  ||||  || ||| | || ||||| || |||||||||||||| ||||| |||| |||||||||  |||||||||| ||    
31608819 aagtggcagtgaaagtaataaacgagtcaaaaggaaatggggaagagttcataaatgaagttgctagcatcagtagaacatcacacctgaacattgtgtc 31608720  T
281 acttttgggtttttgttatga 301  Q
    ||| || ||||||||||||||    
31608719 actcttaggtttttgttatga 31608699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 78 - 313
Target Start/End: Complemental strand, 31618932 - 31618697
Alignment:
78 tatagttatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggcc 177  Q
    |||||||||||||||| ||||| | |||||||||  |||||||| ||||| || |||||||| ||||||||||| |||||||||||||||  | || | |    
31618932 tatagttatgcagaagtgaaaatgatcacaaactattttcgagaaaagttaggccaaggagggtatggtgttgtctacaaagcaagtttatataatagtc 31618833  T
178 gtcatgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgt 277  Q
    |||| || || |||||||||||||| |||   |||||| | ||||||||||| |||||||||||||| ||||| ||||  ||||||||| ||||||||||    
31618832 gtcaagtggcagtgaaagtaataagcgagacaaagggaaatggagaagaattcataaatgaagttgctagcattagtaggacatcacatatgaacattgt 31618733  T
278 ctcacttttgggtttttgttatgaaaagaacaaaag 313  Q
     || ||||| || | |||||| ||| ||||||||||    
31618732 gtcgcttttaggatattgttacgaagagaacaaaag 31618697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 81 - 298
Target Start/End: Complemental strand, 31595716 - 31595499
Alignment:
81 agttatgcagaagcgaaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtc 180  Q
    |||||||||||||  |||||| ||||||||||||| || ||||| || || || ||||||||||||||||||||||||||||||||| | ||||| ||||    
31595716 agttatgcagaagtaaaaaggatcacaaactcattccgtgataaattaggccacggaggatatggtgttgtgtacaaagcaagtttaacggatggtcgtc 31595617  T
181 atgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctc 280  Q
    | || || |||||||||||||  ||||  || ||| | || ||||| || |||||||||||||| ||||| |||| |||||||||  |||||||||| ||    
31595616 aagtggcagtgaaagtaataaacgagtcaaaaggaaatggggaagagttcataaatgaagttgctagcatcagtagaacatcacacatgaacattgtgtc 31595517  T
281 acttttgggtttttgtta 298  Q
    |||||| |||| ||||||    
31595516 acttttaggttattgtta 31595499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 301
Target Start/End: Complemental strand, 31605310 - 31605105
Alignment:
96 aaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatgttgcggtgaaag 195  Q
    |||||| | |||||||| || |||| ||| || || |||||||||||||||||||| |||||||||||||||  |||||| ||||| || ||||||||||    
31605310 aaaaggataacaaactctttccgagttaaattaggccaaggaggatatggtgttgtttacaaagcaagtttaattgatggtcgtcaagtggcggtgaaag 31605211  T
196 taataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcacttttgggtttttg 295  Q
    |||||| ||| | ||| ||| | ||||||||||| |||||||||||||| ||||| |||  |||||||||  |||||||||| || ||||| || |||||    
31605210 taataaatgaatccaaaggaaatggagaagaattcataaatgaagttgctagcattagtcgaacatcacacatgaacattgtgtcccttttaggcttttg 31605111  T
296 ttatga 301  Q
    ||||||    
31605110 ttatga 31605105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 32351856 - 32351743
Alignment:
188 ggtgaaagtaataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcacttttg 287  Q
    ||||||| |||||| ||| |  |||||||| ||| |||| || ||||||||||| |  || || | || ||| ||||||||||||||||| |||||||||    
32351856 ggtgaaaataataaatgattcaaagggagatggaaaagatttcataaatgaagtagatagaattactagaacctcacatgtgaacattgtttcacttttg 32351757  T
288 ggtttttgttatga 301  Q
    ||||||||||||||    
32351756 ggtttttgttatga 32351743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 32355827 - 32355875
Alignment:
253 gtaaaacatcacatgtgaacattgtctcacttttgggtttttgttatga 301  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||    
32355827 gtaaaacctcacatatgaacattgtttcacttttgggtttttgttatga 32355875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 31 - 320
Target Start/End: Original strand, 15062883 - 15063172
Alignment:
31 atattgaggatttcattaaaagatttaatttgtcggtgccgaagtggtatagttatgcagaagcgaaaaggttcacaaactcatttcgagataagttggg 130  Q
    |||||||||||||||| ||||||| ||||||||| ||||| ||| ||| |||||||||||| | |||||||||||||||||| |||||||||||||||||    
15062883 atattgaggatttcataaaaagatataatttgtcagtgcctaagcggtttagttatgcagatgtgaaaaggttcacaaactcgtttcgagataagttggg 15062982  T
131 tcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatgttgcggtgaaagtaataagtgagtgcaagggagacggagaagaattt 230  Q
     |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||    
15062983 ccaaggaggatatggtgttgtttacaaagccagtttacctgatggccgtcatgtagcggtgaaagtgataagcgagtgcaagggaaacggagaagaattt 15063082  T
231 ataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcacttttgggtttttgttatgaaaagaacaaaagtgcattg 320  Q
    ||||||||||||||||||||||  |||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||    
15063083 ataaatgaagttgcaagcataacaaaaacatcacatatgaacgttgtttcacttttgggtttttgttatgagaagaacaaaagagcattg 15063172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 96 - 301
Target Start/End: Original strand, 52173895 - 52174100
Alignment:
96 aaaaggttcacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatgttgcggtgaaag 195  Q
    |||||| ||||||| || || |||||||| || || |||||||||||||||||||| ||||||||||||||||||||||| ||||| || || || ||||    
52173895 aaaaggatcacaaaatctttccgagataaattaggccaaggaggatatggtgttgtatacaaagcaagtttacctgatggtcgtcaagtggctgttaaag 52173994  T
196 taataagtgagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcacatgtgaacattgtctcacttttgggtttttg 295  Q
    ||||||  ||||  ||||| || ||||||||||| |||||||||||||| ||||| |||| ||||||||| ||||||||||| |||||||| || | |||    
52173995 taataaacgagttaaagggggatggagaagaattcataaatgaagttgctagcattagtagaacatcacacgtgaacattgtgtcacttttaggctattg 52174094  T
296 ttatga 301  Q
    ||||||    
52174095 ttatga 52174100  T

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