View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_14 (Length: 337)
Name: NF1331_low_14
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 46254990 - 46255187
Alignment:
| Q |
2 |
cgttggaaaacctatcacttaaaaatctaccattcctgccaccacctgaaaacctactaccgccaccacgaccactaccatcaccaaatctaacccctct |
101 |
Q |
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| T |
46254990 |
cgttggaaaacctatcacttgaaaatctaccattcctgccacaacctgaaaacctactaccgccaccacggccactaccatcaccaaatctaacccctct |
46255089 |
T |
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| Q |
102 |
tgattgatctctctgttgcagacgcgacaattctttcaacacctttaatcttacatctgaggcattttccttacctgaagaacaaatatgatagagtt |
199 |
Q |
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| T |
46255090 |
tgattgatctctctgttgcagacgcggcaattctttcaacacctttaatcttacatatgaagcatcttccttacctgaagaacaaatatgatagagtt |
46255187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 46245301 - 46245492
Alignment:
| Q |
1 |
ccgttggaaaacctatcacttaaaaatctaccattcctgccaccacctgaaaacctactaccgccaccacgaccactaccatcaccaaatctaacccctc |
100 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||| |
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| T |
46245301 |
ccgttggaaaatctatcacttgaaaatctaccattcctgccaccacctgaaaacctactacccccaccacgaccaccaccatcaccaaatctaccacctc |
46245400 |
T |
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| Q |
101 |
ttgattgatctctctgttgcagacgcgacaattctttcaacacctttaatcttacatctgaggcattttccttacctgaagaacaaatatga |
192 |
Q |
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| T |
46245401 |
ttgattgatctctctgttgcagacgtggcaattctttcaacacctctaatcttacatctgagacattttccttacctaaagaacaaatatga |
46245492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 12370177 - 12370350
Alignment:
| Q |
3 |
gttggaaaacctatcacttaaaaatctaccattcctgccaccacctgaaaacctactaccgccaccacgaccactaccatcaccaaatctaacccctctt |
102 |
Q |
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||||||||||||||||||| ||||||||||| | ||||||| | | |||||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |
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| T |
12370177 |
gttggaaaacctatcacttgaaaatctaccacttctgccacaaaccgaaaacctactaaccccaccgcgaccgctaccatcaccaaatctaccccctctc |
12370276 |
T |
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| Q |
103 |
gattgatctctctgttgcagacgcgacaattctttcaacacctttaatcttacatctgaggcattttccttacc |
176 |
Q |
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||||||||||| |||||| ||||||||||||||| |||| || |||||||||||| ||||||||||||||||| |
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| T |
12370277 |
aattgatctctcggttgcaaacgcgacaattcttttaacatctctaatcttacatcagaggcattttccttacc |
12370350 |
T |
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