View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_16 (Length: 329)
Name: NF1331_low_16
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_16 |
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| [»] chr5 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 38816363 - 38816676
Alignment:
| Q |
16 |
atgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagg |
115 |
Q |
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| T |
38816363 |
atgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagg |
38816462 |
T |
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| Q |
116 |
gcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaa |
215 |
Q |
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| T |
38816463 |
gcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaa |
38816562 |
T |
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| Q |
216 |
tatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaagcacgga |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38816563 |
tatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaatcacgga |
38816662 |
T |
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| Q |
316 |
cactcctcgaatta |
329 |
Q |
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|||||||||||||| |
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| T |
38816663 |
cactcctcgaatta |
38816676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
21 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
120 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
121 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
170 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
241 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
279 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Original strand, 24906250 - 24906279
Alignment:
| Q |
300 |
aactatgaagcacggacactcctcgaatta |
329 |
Q |
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| T |
24906250 |
aactatgaagcacggacactcctcgaatta |
24906279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Original strand, 34073276 - 34073305
Alignment:
| Q |
300 |
aactatgaagcacggacactcctcgaatta |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34073276 |
aactatgaagcacggacactcctcgaatta |
34073305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Original strand, 5440965 - 5440994
Alignment:
| Q |
300 |
aactatgaagcacggacactcctcgaatta |
329 |
Q |
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| T |
5440965 |
aactatgaagcacggacactcctcgaatta |
5440994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 17852120 - 17852092
Alignment:
| Q |
301 |
actatgaagcacggacactcctcgaatta |
329 |
Q |
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| T |
17852120 |
actatgaagcacggacactcctcgaatta |
17852092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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