View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_21 (Length: 314)
Name: NF1331_low_21
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 910587 - 910511
Alignment:
| Q |
158 |
ataattctgtttgccatattaaaaggaggccctttaatctcctattccctttccgatcgaaaaagcaaaacatttga |
234 |
Q |
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| T |
910587 |
ataattctgtttgccatattaaaaggaggccctttaatctcctattccctttccgatcgaaaaagcaaaacatttga |
910511 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 910483 - 910415
Alignment:
| Q |
232 |
tgactaagatcaaacccaaccaaacaaagactttaatccta-tcttcccggcaaacctacactctacat |
299 |
Q |
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| T |
910483 |
tgaccaagaccaaacccaaccaaacgaagactttaatccaaatcttcccggcaaacctacactctacat |
910415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 910626 - 910586
Alignment:
| Q |
30 |
aaaatggttgaagctaaagcgtagcgtaagtctaaagctat |
70 |
Q |
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| T |
910626 |
aaaatggttgaagctaaaccgcagcgtcagtctaaagctat |
910586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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